Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   L3475_RS09755 Genome accession   NZ_CP091451
Coordinates   1878674..1880650 (-) Length   658 a.a.
NCBI ID   WP_000067860.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 3238/09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1873674..1885650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3475_RS09735 (L3475_09660) adhE 1874421..1877072 (-) 2652 WP_000763967.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  L3475_RS09740 (L3475_09665) - 1877372..1877782 (-) 411 WP_000429499.1 MORN repeat-containing protein -
  L3475_RS09745 (L3475_09670) - 1877784..1878212 (-) 429 WP_000737440.1 low molecular weight protein-tyrosine-phosphatase -
  L3475_RS09750 (L3475_09675) yajC 1878258..1878557 (-) 300 WP_001069051.1 preprotein translocase subunit YajC -
  L3475_RS09755 (L3475_09680) recP/tkt 1878674..1880650 (-) 1977 WP_000067860.1 transketolase Machinery gene
  L3475_RS09760 (L3475_09685) ulaG 1880764..1881855 (-) 1092 WP_001134220.1 L-ascorbate 6-phosphate lactonase -
  L3475_RS09765 (L3475_09690) - 1881967..1883640 (-) 1674 WP_000242107.1 transcription antiterminator -
  L3475_RS09770 (L3475_09695) - 1883823..1884527 (-) 705 WP_001077556.1 L-ribulose-5-phosphate 4-epimerase -
  L3475_RS09775 (L3475_09700) - 1884529..1885392 (-) 864 WP_000252141.1 L-ribulose-5-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71127.72 Da        Isoelectric Point: 4.8479

>NTDB_id=561567 L3475_RS09755 WP_000067860.1 1878674..1880650(-) (recP/tkt) [Streptococcus pneumoniae strain 3238/09]
MSNLSVNAIRFLGIDAINKANSGHPGVVMGAAPMAYSLFTKQLHINPAQPNWINRDRFILSAGHGSMLLYALLHLSGFED
VSMDEIKSFRQWGSKTPGHPEFGHTAGIDATTGPLGQGISTATGFAQAERFLAAKYNREGYNIFDHYTYVICGDGDLMEG
VSSEAASYAGLQKLDKLVVLYDSNDINLDGETKDSFTESVRDRYNAYGWHTALVENGTDLEAIHAAIETAKASGKPSLIE
VKTVIGYGSPNKQGTNAVHGAPLGADETASTRQALGWDYEPFEIPEQVYADFKEHVADRGASAYQAWTKLVADYKEAHPE
LAAEVEAIIDGRDPVEVTPADFPALENGFSQATRNSSQDALNVVAAKLPTFLGGSADLAHSNMTYIKTDGLQDDTNRLNR
NIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPVEHLAGLR
AMPNLNVFRPADARETQAAWYLAVTSEKTPTALVLTRQNLTVEDGTDFDKVAKGAYVVYENAADFDTILIATGSEVNLAV
SAAKELASQGEKIRVVSMPSTDVFDKQDAAYKEEILPNAVRRRVAVEMGASQNWYKYVGLDGAVLGIDTFGASAPAPKVL
AEYGFTVENLVKVVRNLK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=561567 L3475_RS09755 WP_000067860.1 1878674..1880650(-) (recP/tkt) [Streptococcus pneumoniae strain 3238/09]
ATGTCAAATCTATCTGTTAATGCAATTCGTTTTCTAGGTATTGACGCCATTAATAAAGCCAACTCAGGTCATCCAGGTGT
GGTTATGGGAGCGGCTCCGATGGCTTACAGCCTCTTTACAAAACAACTTCATATCAATCCAGCTCAACCAAATTGGATTA
ACCGCGACCGCTTTATTCTTTCAGCAGGTCATGGTTCAATGCTCCTTTATGCTCTTCTTCACCTTTCTGGTTTTGAAGAT
GTCAGCATGGATGAGATTAAGAGCTTCCGTCAATGGGGTTCAAAAACACCAGGTCACCCAGAATTTGGTCATACGGCAGG
GATTGATGCTACGACAGGTCCTCTAGGGCAAGGGATTTCAACTGCTACTGGTTTTGCCCAAGCAGAACGTTTCTTGGCAG
CCAAATATAACCGTGAAGGCTACAATATCTTTGACCACTATACTTACGTTATCTGTGGAGACGGAGACTTGATGGAAGGT
GTCTCAAGCGAGGCAGCTTCATACGCAGGTTTGCAAAAACTTGATAAGTTGGTTGTTCTTTATGATTCAAATGATATCAA
CTTGGATGGTGAGACAAAGGATTCCTTTACAGAAAGTGTTCGTGACCGTTACAATGCCTACGGTTGGCATACTGCCTTGG
TTGAAAATGGAACAGACTTGGAAGCCATCCATGCTGCTATCGAAACAGCAAAAGCTTCAGGCAAGCCATCTTTGATTGAA
GTGAAGACGGTTATTGGATATGGTTCTCCAAACAAACAAGGAACTAATGCTGTACACGGCGCCCCTCTTGGAGCAGATGA
AACTGCATCAACTCGCCAAGCCCTCGGTTGGGACTACGAACCATTTGAAATTCCAGAACAAGTATATGCTGATTTCAAAG
AACATGTTGCAGACCGTGGCGCATCAGCTTATCAAGCTTGGACTAAATTAGTTGCAGATTATAAAGAAGCTCATCCAGAA
CTGGCTGCAGAAGTAGAAGCCATCATCGACGGACGTGATCCAGTCGAAGTGACTCCAGCAGACTTCCCAGCTTTAGAAAA
TGGTTTTTCTCAAGCAACTCGTAATTCAAGTCAAGATGCCTTGAATGTTGTGGCAGCTAAATTACCAACCTTCCTAGGTG
GATCAGCTGACCTTGCTCACTCAAACATGACTTATATCAAGACGGATGGACTTCAAGACGATACCAATCGCTTGAATCGT
AACATTCAGTTTGGTGTTCGTGAATTTGCAATGGGAACAATCTTGAACGGGATGGCCCTTCATGGTGGACTTCGTGTATA
CGGTGGAACTTTCTTCGTCTTCTCTGACTATGTGAAGGCAGCTGTCCGCTTGTCAGCCTTACAAGGACTTCCTGTGACTT
ATGTCTTTACCCATGATTCAATCGCAGTTGGGGAAGATGGTCCGACTCACGAACCAGTTGAGCATTTAGCAGGTCTTCGT
GCTATGCCAAATCTAAATGTTTTCCGTCCAGCAGATGCGCGTGAAACGCAAGCAGCTTGGTACCTTGCAGTGACAAGTGA
GAAAACACCAACTGCCCTTGTCTTGACACGTCAAAACTTGACTGTTGAAGATGGAACAGACTTCGACAAGGTTGCTAAAG
GTGCTTATGTTGTATATGAAAATGCAGCCGACTTTGATACCATCTTGATTGCGACAGGTTCAGAGGTTAATCTTGCTGTC
TCAGCTGCTAAAGAATTGGCTAGTCAAGGCGAAAAAATCCGCGTAGTCAGCATGCCATCTACAGATGTCTTTGATAAACA
AGATGCAGCTTACAAGGAAGAAATTCTTCCAAATGCAGTCCGCCGTCGTGTTGCAGTCGAAATGGGTGCAAGTCAAAACT
GGTACAAATATGTTGGTCTCGATGGTGCCGTTCTAGGTATTGATACCTTCGGAGCCTCTGCCCCAGCACCAAAAGTATTG
GCAGAATATGGCTTTACTGTCGAAAATCTTGTAAAAGTTGTTCGAAATTTGAAATAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(544-649)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

79.452

99.848

0.793