Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   L3475_RS07480 Genome accession   NZ_CP091451
Coordinates   1467049..1469019 (-) Length   656 a.a.
NCBI ID   WP_000058260.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 3238/09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1462049..1474019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3475_RS07450 (L3475_07385) - 1462320..1463117 (-) 798 WP_000881161.1 Nif3-like dinuclear metal center hexameric protein -
  L3475_RS07455 (L3475_07390) - 1463104..1463781 (-) 678 WP_000624092.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  L3475_RS07460 (L3475_07395) - 1464330..1464506 (+) 177 WP_000364828.1 hypothetical protein -
  L3475_RS07465 (L3475_07400) - 1464485..1464949 (+) 465 WP_013193472.1 hypothetical protein -
  L3475_RS07470 (L3475_07405) - 1465009..1465395 (+) 387 WP_323128288.1 hypothetical protein -
  L3475_RS07475 (L3475_07410) - 1465405..1466676 (-) 1272 WP_000778457.1 IS3 family transposase -
  L3475_RS07480 (L3475_07415) recP/tkt 1467049..1469019 (-) 1971 WP_000058260.1 transketolase Machinery gene
  L3475_RS07485 (L3475_07420) alsE 1469056..1469751 (-) 696 WP_000086495.1 D-allulose 6-phosphate 3-epimerase -
  L3475_RS07490 (L3475_07425) - 1469762..1470847 (-) 1086 WP_000912154.1 PTS fructose transporter subunit IIC -
  L3475_RS07495 (L3475_07430) - 1470873..1471184 (-) 312 WP_000706301.1 PTS fructose transporter subunit IIB -
  L3475_RS07500 (L3475_07435) - 1471212..1471661 (-) 450 WP_000402984.1 fructose PTS transporter subunit IIA -
  L3475_RS07505 (L3475_07440) - 1471639..1472067 (-) 429 WP_001061751.1 PTS sugar transporter subunit IIA -
  L3475_RS07510 (L3475_07445) - 1472060..1473523 (-) 1464 WP_000087923.1 PRD domain-containing protein -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 70917.73 Da        Isoelectric Point: 4.9127

>NTDB_id=561540 L3475_RS07480 WP_000058260.1 1467049..1469019(-) (recP/tkt) [Streptococcus pneumoniae strain 3238/09]
MSLQSVNAIRFLGVDAINKSNSGHPGIVMGAAPMAYSLFTKHLRITPEQPNWINRDRFILSAGHGSMLLYALLHLTGYND
VSMDEIKNFRQWGSKTPGHPEVTHTSGVDATSGPLGQGISTAVGFAQAERFLAAKYNKDGFPIFDHYTYVIAGDGDFMEG
VSAEAASYAGHQALDKLIVLYDSNDICLDGETKDTFSENVRARYDAYGWHTVLVEDGTDLAAISTAIETAKFSGKPSLIE
VKTVIGYGSPNKSGTNAVHGAPLGAEETGATRKFLGWDYDPFEVPEEVYSDFKTNVADRGQEAYDAWASLVSDYKVAYPE
VASEIDAIVAGKFPVTITEKDFPVYENGFSQATRNSSQDAINTAAAVLPTFLGGSADLAHSNMTYIKADGLQDKYNPLNR
NIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAIRLSAIQELPVTYVFTHDSIAVGEDGPTHEPVEHLAGLR
SMPNLTVIRPADARETQAAWHHALTSTTTPTVIVLTRQNLVVEEGTDFGKVAKGAYVVYDTPGFDTIIIATGSEVNLAIK
AAKELVLQGGKVRVVSMPSTELFDAQDATYKEDILPSKTRRRVAIEMAATQSWYKYVGLDGAVIGIDIFGASAPAQTVID
NYGFTVENIVAQVKSL

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=561540 L3475_RS07480 WP_000058260.1 1467049..1469019(-) (recP/tkt) [Streptococcus pneumoniae strain 3238/09]
ATGTCACTACAATCAGTTAACGCCATTCGTTTTCTTGGCGTAGATGCTATTAACAAATCTAATTCTGGTCACCCGGGAAT
CGTCATGGGTGCTGCGCCAATGGCTTATAGCCTATTTACAAAGCACCTTAGAATTACACCTGAGCAGCCAAACTGGATTA
ACCGAGATCGCTTTATCTTGTCTGCGGGTCATGGATCAATGCTACTGTATGCTCTCTTGCATTTAACAGGGTATAACGAT
GTATCCATGGACGAGATTAAAAATTTCCGGCAATGGGGATCTAAGACACCTGGTCATCCTGAAGTGACGCATACGTCTGG
TGTGGATGCGACATCTGGTCCGCTTGGTCAGGGAATTTCTACTGCCGTTGGTTTCGCCCAAGCAGAGCGTTTTTTAGCTG
CTAAGTACAACAAAGATGGTTTCCCTATTTTTGACCATTATACTTATGTTATTGCTGGAGACGGTGACTTCATGGAAGGA
GTGTCTGCGGAGGCGGCTTCTTATGCAGGTCATCAAGCTTTAGATAAGCTTATCGTCCTCTACGACTCCAACGACATCTG
CTTGGATGGTGAGACCAAAGATACTTTCTCTGAAAATGTTCGCGCCCGTTACGATGCTTATGGTTGGCATACAGTTCTGG
TAGAAGATGGAACAGATTTAGCAGCAATTTCTACAGCAATTGAGACGGCCAAGTTTTCTGGTAAGCCGAGTTTGATTGAA
GTGAAAACGGTAATTGGTTACGGCTCACCCAATAAAAGTGGTACAAATGCTGTTCATGGTGCACCACTAGGAGCAGAAGA
AACAGGAGCAACTCGTAAGTTTTTGGGATGGGATTACGATCCATTTGAAGTACCAGAGGAAGTATATTCTGATTTCAAGA
CAAATGTAGCGGATCGTGGTCAGGAGGCATACGATGCTTGGGCTAGTTTGGTGTCTGATTACAAGGTTGCTTATCCCGAA
GTTGCTAGTGAGATTGACGCTATTGTAGCTGGAAAATTCCCTGTAACCATTACTGAAAAAGACTTCCCTGTCTATGAGAA
TGGCTTCTCTCAAGCAACTCGTAATTCGTCCCAAGATGCTATTAATACAGCAGCAGCAGTTTTACCAACCTTCTTAGGTG
GATCGGCAGACTTAGCTCACTCCAACATGACCTACATCAAGGCAGATGGCTTACAAGATAAATATAATCCATTAAACCGC
AATATTCAGTTTGGGGTACGTGAATTTGCCATGGGAACAATCCTCAATGGAATGGCTCTTCATGGTGGTTTACGAGTTTA
TGGCGGAACCTTCTTTGTTTTCTCTGACTACGTCAAAGCTGCTATTCGGCTATCAGCCATTCAGGAGTTGCCTGTAACTT
ATGTCTTTACCCATGATTCAATTGCCGTTGGTGAAGATGGTCCAACTCATGAACCAGTTGAACATTTGGCAGGTTTACGC
TCAATGCCAAACTTGACTGTTATCCGTCCAGCGGATGCCCGTGAAACTCAAGCGGCTTGGCATCATGCCTTGACCAGTAC
CACCACTCCAACTGTCATTGTCTTAACCCGTCAAAACTTGGTAGTTGAAGAAGGGACAGACTTTGGTAAGGTCGCTAAAG
GAGCCTACGTCGTGTATGATACCCCGGGATTTGATACTATTATCATTGCTACAGGATCTGAGGTCAATCTAGCTATCAAA
GCTGCTAAGGAATTGGTTTTACAAGGTGGTAAAGTACGTGTGGTATCTATGCCCTCAACCGAACTATTTGATGCTCAAGA
TGCTACCTACAAGGAAGACATTTTACCATCTAAGACTCGTCGTCGTGTGGCCATTGAAATGGCAGCGACCCAAAGTTGGT
ACAAGTATGTTGGTTTGGATGGCGCGGTCATCGGTATTGACATCTTCGGTGCGTCTGCCCCAGCTCAGACTGTGATTGAT
AATTATGGATTTACGGTAGAGAATATCGTTGCTCAAGTTAAGTCCCTATAG

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(536-649)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

99.39

100

0.994