Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   L3474_RS09430 Genome accession   NZ_CP091450
Coordinates   1844779..1846743 (-) Length   654 a.a.
NCBI ID   WP_263275190.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 3641/15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1839779..1851743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3474_RS09410 (L3474_09345) adhE 1840526..1843177 (-) 2652 WP_000763967.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  L3474_RS09415 (L3474_09350) - 1843477..1843887 (-) 411 WP_000429499.1 MORN repeat-containing protein -
  L3474_RS09420 (L3474_09355) - 1843889..1844317 (-) 429 WP_000737440.1 low molecular weight protein-tyrosine-phosphatase -
  L3474_RS09425 (L3474_09360) yajC 1844363..1844662 (-) 300 WP_001069051.1 preprotein translocase subunit YajC -
  L3474_RS09430 (L3474_09365) recP/tkt 1844779..1846743 (-) 1965 WP_263275190.1 transketolase Machinery gene
  L3474_RS09435 (L3474_09370) ulaG 1846857..1847948 (-) 1092 WP_001134220.1 L-ascorbate 6-phosphate lactonase -
  L3474_RS09440 (L3474_09375) - 1848060..1849733 (-) 1674 WP_000242107.1 transcription antiterminator -
  L3474_RS09445 (L3474_09380) - 1849916..1850620 (-) 705 WP_001077556.1 L-ribulose-5-phosphate 4-epimerase -
  L3474_RS09450 (L3474_09385) - 1850622..1851485 (-) 864 WP_000252141.1 L-ribulose-5-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 70741.21 Da        Isoelectric Point: 4.8479

>NTDB_id=561452 L3474_RS09430 WP_263275190.1 1844779..1846743(-) (recP/tkt) [Streptococcus pneumoniae strain 3641/15]
MSNLSVNAIRFLGIDAINKANSGHPGAAPMAYSLFTKQLHINPAQPNWINRDRFILSAGHGSMLLYALLHLSGFEDVSMD
EIKSFRQWGSKTPGHPEFGHTAGIDATTGPLGQGISTATGFAQAERFLAAKYNREGYNIFDHYTYVICGDGDLMEGVSSE
AASYAGLQKLDKLVVLYDSNDINLDGETKDSFTESVRDRYNAYGWHTALVENGTDLEAIHAAIETAKASGKPSLIEVKTV
IGYGSPNKQGTNAVHGAPLGADETASTRQALGWDYEPFEIPEQVYADFKEHVADRGASAYQAWTKLVADYKEAHPELAAE
VEAIIDGRDPVEVTPADFPALENGFSQATRNSSQDALNVVAAKLPTFLGGSADLAHSNMTYIKTDGLQDDTNRLNRNIQF
GVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPVEHLAGLRAMPN
LNVFRPADARETQAAWYLAVTSEKTPTALVLTRQNLTVEDGTDFDKVAKGAYVVYENAADFDTILIATGSEVNLAVSAAK
ELASQGEKIRVVSMPSTDVFDKQDAAYKEEILPNAVRRRVAVEMGASQNWYKYVGLDGAVLGIDTFGASAPAPKVLAEYG
FTVENLVKVVRNLK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=561452 L3474_RS09430 WP_263275190.1 1844779..1846743(-) (recP/tkt) [Streptococcus pneumoniae strain 3641/15]
ATGTCAAATCTATCTGTTAATGCAATTCGTTTTCTAGGTATTGACGCCATTAATAAAGCCAACTCAGGTCATCCAGGTGC
GGCTCCGATGGCTTACAGCCTCTTTACAAAACAACTTCATATCAATCCAGCTCAACCAAATTGGATTAACCGCGACCGCT
TTATTCTTTCAGCAGGTCATGGTTCAATGCTCCTTTATGCTCTTCTTCACCTTTCTGGTTTTGAAGATGTCAGCATGGAT
GAGATTAAGAGCTTCCGTCAATGGGGTTCAAAAACACCAGGTCACCCAGAATTTGGTCATACGGCAGGGATTGATGCTAC
GACAGGTCCTCTAGGGCAAGGGATTTCAACTGCTACTGGTTTTGCCCAAGCAGAACGTTTCTTGGCAGCCAAATATAACC
GTGAAGGCTACAATATCTTTGACCACTATACTTACGTTATCTGTGGAGACGGAGACTTGATGGAAGGTGTCTCAAGCGAG
GCAGCTTCATACGCAGGTTTGCAAAAACTTGATAAGTTGGTTGTTCTTTATGATTCAAATGATATCAACTTGGATGGTGA
GACAAAGGATTCCTTTACAGAAAGTGTTCGTGACCGTTACAATGCCTACGGTTGGCATACTGCCTTGGTTGAAAATGGAA
CAGACTTGGAAGCCATCCATGCTGCTATCGAAACAGCAAAAGCTTCAGGCAAGCCATCTTTGATTGAAGTGAAGACGGTT
ATTGGATATGGTTCTCCAAACAAACAAGGAACTAATGCTGTACACGGCGCCCCTCTTGGAGCAGATGAAACTGCATCAAC
TCGCCAAGCCCTCGGTTGGGACTACGAACCATTTGAAATTCCAGAACAAGTATATGCTGATTTCAAAGAACATGTTGCAG
ACCGTGGCGCATCAGCTTATCAAGCTTGGACTAAATTAGTTGCAGATTATAAAGAAGCTCATCCAGAACTGGCTGCAGAA
GTAGAAGCCATCATCGACGGACGTGATCCAGTCGAAGTGACTCCAGCAGACTTCCCAGCTTTAGAAAATGGTTTTTCTCA
AGCAACTCGTAATTCAAGTCAAGATGCCTTGAATGTTGTGGCAGCTAAATTACCAACCTTCCTAGGTGGATCAGCTGACC
TTGCTCACTCAAACATGACTTATATCAAGACGGATGGACTTCAAGACGATACCAATCGCTTGAATCGTAACATTCAGTTT
GGTGTTCGTGAATTTGCAATGGGAACAATCTTGAACGGGATGGCCCTTCATGGTGGACTTCGTGTATACGGTGGAACTTT
CTTCGTCTTCTCTGACTATGTGAAGGCAGCTGTCCGCTTGTCAGCCTTACAAGGACTTCCTGTGACTTATGTCTTTACCC
ATGATTCAATCGCAGTTGGGGAAGATGGTCCGACTCACGAACCAGTTGAGCATTTAGCAGGTCTTCGTGCTATGCCAAAT
CTAAATGTTTTCCGTCCAGCAGATGCGCGTGAAACGCAAGCAGCTTGGTACCTTGCAGTGACAAGTGAGAAAACACCAAC
TGCCCTTGTCTTGACACGTCAAAACTTGACTGTTGAAGATGGAACAGACTTCGACAAGGTTGCTAAAGGTGCTTATGTTG
TATATGAAAATGCAGCCGACTTTGATACCATCTTGATTGCGACAGGTTCAGAGGTTAATCTTGCTGTCTCAGCTGCTAAA
GAATTGGCTAGTCAAGGCGAAAAAATCCGCGTAGTCAGCATGCCATCTACAGATGTCTTTGATAAACAAGATGCAGCTTA
CAAGGAAGAAATTCTTCCAAATGCAGTCCGCCGTCGTGTTGCAGTCGAAATGGGTGCAAGTCAAAACTGGTACAAATATG
TTGGTCTCGATGGTGCCGTTCTAGGTATTGATACCTTCGGAGCCTCTGCCCCAGCACCAAAAGTATTGGCAGAATATGGC
TTTACTGTCGAAAATCTTGTAAAAGTTGTTCGAAATTTGAAATAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(540-645)

Transketolase, pyrimidine binding domain (Transket_pyr)

(348-517)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

78.995

100

0.794