Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KSO_RS18935 Genome accession   NC_020272
Coordinates   3882611..3882901 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens IT-45     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3877611..3887901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS18920 (KSO_019200) - 3877834..3879159 (-) 1326 WP_088005470.1 G5 and 3D domain-containing protein -
  KSO_RS18925 (KSO_019205) - 3879294..3880061 (-) 768 WP_004264700.1 TatD family hydrolase -
  KSO_RS18930 (KSO_019210) metG 3880137..3882128 (-) 1992 WP_015388789.1 methionine--tRNA ligase -
  KSO_RS18935 (KSO_019215) abrB 3882611..3882901 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  KSO_RS18940 (KSO_019220) rsmI 3882951..3883832 (-) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KSO_RS18945 (KSO_019225) - 3883807..3884106 (-) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  KSO_RS18950 (KSO_019230) - 3884093..3884836 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KSO_RS18955 (KSO_019235) yabA 3884897..3885256 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  KSO_RS18960 (KSO_019240) ricT 3885271..3886098 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  KSO_RS18965 (KSO_019245) holB 3886101..3887090 (-) 990 WP_015388790.1 DNA polymerase III subunit delta' -
  KSO_RS18970 (KSO_019250) - 3887102..3887542 (-) 441 WP_004264730.1 YaaR family protein -
  KSO_RS18975 (KSO_019255) darA 3887555..3887884 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=56141 KSO_RS18935 WP_169510469.1 3882611..3882901(+) (abrB) [Bacillus amyloliquefaciens IT-45]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=56141 KSO_RS18935 WP_169510469.1 3882611..3882901(+) (abrB) [Bacillus amyloliquefaciens IT-45]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment