Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   L3474_RS04805 Genome accession   NZ_CP091450
Coordinates   956920..957384 (+) Length   154 a.a.
NCBI ID   WP_001135781.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 3641/15     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 951920..962384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3474_RS10625 - 953834..953908 (+) 75 Protein_947 dihydroxyacetone kinase subunit L -
  L3474_RS04785 (L3474_04750) dhaM 953908..954288 (+) 381 WP_000443787.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  L3474_RS04790 (L3474_04755) - 954747..955460 (+) 714 WP_000499429.1 YjjG family noncanonical pyrimidine nucleotidase -
  L3474_RS04795 (L3474_04760) - 955474..956121 (+) 648 WP_001810198.1 hypothetical protein -
  L3474_RS04800 (L3474_04765) - 956257..956910 (+) 654 WP_000401326.1 uracil-DNA glycosylase -
  L3474_RS04805 (L3474_04770) mutX 956920..957384 (+) 465 WP_001135781.1 8-oxo-dGTP diphosphatase Machinery gene
  L3474_RS04810 (L3474_04775) - 957397..958665 (+) 1269 WP_000924492.1 dihydroorotase -
  L3474_RS04815 (L3474_04780) - 958679..958939 (+) 261 WP_001105925.1 hypothetical protein -
  L3474_RS04820 (L3474_04785) pdrM 958950..960311 (+) 1362 WP_000278538.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  L3474_RS04825 (L3474_04790) - 960465..961433 (+) 969 WP_000105360.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17842.19 Da        Isoelectric Point: 4.2287

>NTDB_id=561402 L3474_RS04805 WP_001135781.1 956920..957384(+) (mutX) [Streptococcus pneumoniae strain 3641/15]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECATREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=561402 L3474_RS04805 WP_001135781.1 956920..957384(+) (mutX) [Streptococcus pneumoniae strain 3641/15]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGACGCGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGACGCTAGAATGGGTTCC
CTATGATGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

98.701

100

0.987