Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   L3474_RS01825 Genome accession   NZ_CP091450
Coordinates   344555..345151 (-) Length   198 a.a.
NCBI ID   WP_000248773.1    Uniprot ID   C1CPN7
Organism   Streptococcus pneumoniae strain 3641/15     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 339555..350151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3474_RS01820 (L3474_01790) pbp1a 342399..344558 (-) 2160 WP_001041857.1 penicillin-binding protein PBP1A -
  L3474_RS01825 (L3474_01795) recU 344555..345151 (-) 597 WP_000248773.1 Holliday junction resolvase RecU Machinery gene
  L3474_RS01830 (L3474_01800) - 345218..345745 (+) 528 WP_000179553.1 DUF1273 domain-containing protein -
  L3474_RS01835 (L3474_01805) gpsB 345815..346156 (+) 342 WP_000200644.1 cell division regulator GpsB -
  L3474_RS01845 (L3474_01815) - 346642..347799 (+) 1158 WP_000711397.1 class I SAM-dependent RNA methyltransferase -
  L3474_RS01850 (L3474_01820) mapZ 347812..349218 (+) 1407 WP_000039266.1 mid-cell-anchored protein MapZ -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23098.53 Da        Isoelectric Point: 9.9801

>NTDB_id=561378 L3474_RS01825 WP_000248773.1 344555..345151(-) (recU) [Streptococcus pneumoniae strain 3641/15]
MVNYPHKLSSQKRQPSLSQPKNFANRGMSFEKMINATNDYYLSQGLAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYNGYYIDFEAKETKQKRAIPMKNFHPHQIQHMEQILAQQGICFVLLHFSSQQETYLLPAYDLIRFYHQDKGQK
SMPLGYIREYGYEIKAGAFPQIPYLNVIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=561378 L3474_RS01825 WP_000248773.1 344555..345151(-) (recU) [Streptococcus pneumoniae strain 3641/15]
ATGGTCAACTATCCACATAAACTTTCATCACAAAAAAGACAACCATCTCTTTCTCAACCCAAAAATTTCGCAAATCGAGG
AATGTCTTTTGAAAAGATGATCAATGCTACCAACGACTACTATTTGTCTCAGGGCTTGGCTGTTATACACAAGAAACCAA
CTCCTATTCAAATCGTACGAGTGGACTATCCACAACGAAGTCGTGCCAAGATTGTTGAAGCCTATTTTCGACAAGCTTCA
ACGACGGACTATTCTGGCGTTTATAATGGATATTACATCGACTTTGAAGCCAAGGAAACAAAACAAAAACGTGCGATTCC
GATGAAAAATTTCCATCCACATCAGATTCAGCATATGGAACAAATCCTTGCTCAACAAGGAATCTGCTTTGTCCTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTACCGGCATATGATTTGATTCGCTTCTATCATCAAGATAAGGGGCAAAAA
TCAATGCCACTTGGATATATTCGAGAATATGGATATGAAATCAAGGCTGGTGCCTTCCCTCAAATTCCCTATCTCAATGT
TATCAAAGAACATTTATTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CPN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.768

100

0.5