Detailed information NTG0056135

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: KSO_RS17205
• Genome accession: NC_020272
• Coordinates: 3548825..3549973 (-)
• Length: 382 a.a.
• NCBI ID: WP_014304340.1
• Uniprot ID: I2C1C2
• Organism: Bacillus amyloliquefaciens IT-45
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3543825..3554973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KSO_RS17180 (KSO_017655)	-	3543961..3544719 (-)	759	WP_015388706.1	ABC transporter ATP-binding protein	-
KSO_RS17185 (KSO_017660)	-	3544713..3545660 (-)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
KSO_RS17190 (KSO_017665)	ceuB	3545650..3546603 (-)	954	WP_003156332.1	ABC transporter permease	Machinery gene
KSO_RS17195 (KSO_017670)	-	3547018..3548382 (+)	1365	WP_014304341.1	aspartate kinase	-
KSO_RS19850	-	3548462..3548572 (+)	111	WP_369719092.1	YjcZ family sporulation protein	-
KSO_RS17200 (KSO_017675)	phrC	3548722..3548841 (-)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
KSO_RS17205 (KSO_017680)	rapC	3548825..3549973 (-)	1149	WP_014304340.1	Rap family tetratricopeptide repeat protein	Regulator
KSO_RS17210 (KSO_017690)	-	3550126..3551559 (-)	1434	WP_161625271.1	sensor histidine kinase	-
KSO_RS17215 (KSO_017695)	-	3551546..3552229 (-)	684	WP_015388707.1	response regulator transcription factor	-
KSO_RS17220 (KSO_017700)	-	3552442..3553878 (+)	1437	WP_015388708.1	ABC transporter permease	-
KSO_RS17225 (KSO_017705)	-	3553893..3554576 (+)	684	WP_015388709.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45494.75 Da
• Isoelectric Point: 4.9939

>NTDB_id=56135 KSO_RS17205 WP_014304340.1 3548825..3549973(-) (rapC) [Bacillus amyloliquefaciens IT-45]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=56135 KSO_RS17205 WP_014304340.1 3548825..3549973(-) (rapC) [Bacillus amyloliquefaciens IT-45]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTCGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

3D structure

• AlphaFold DB: I2C1C2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568