Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L3Z43_RS13275 Genome accession   NZ_CP091427
Coordinates   2748376..2749803 (+) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli strain 1000C-3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2743376..2754803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Z43_RS13235 yeeW 2743560..2743754 (+) 195 WP_000988600.1 DUF5983 family protein -
  L3Z43_RS13240 - 2743800..2743880 (+) 81 Protein_2593 hypothetical protein -
  L3Z43_RS13245 - 2744169..2744315 (-) 147 Protein_2594 transposase domain-containing protein -
  L3Z43_RS13250 - 2744369..2744551 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  L3Z43_RS13255 tmaR 2744652..2744981 (-) 330 WP_000450409.1 DUF496 family protein -
  L3Z43_RS13260 yeeA 2745153..2746211 (-) 1059 WP_001200890.1 FUSC family protein -
  L3Z43_RS13265 sbmC 2746409..2746882 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  L3Z43_RS13270 dacD 2747001..2748167 (-) 1167 WP_000830144.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  L3Z43_RS13275 sbcB 2748376..2749803 (+) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  L3Z43_RS13280 tsuB 2749846..2750073 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  L3Z43_RS13285 tsuA 2750087..2751145 (-) 1059 WP_000492333.1 thiosulfate utilization transporter TsuA/YeeE -
  L3Z43_RS13290 plaP 2751324..2752682 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  L3Z43_RS13295 yoeI 2752672..2752734 (-) 63 WP_010723108.1 membrane protein YoeI -
  L3Z43_RS13300 yeeY 2752949..2753878 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  L3Z43_RS13305 yeeZ 2753924..2754748 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=561318 L3Z43_RS13275 WP_000980539.1 2748376..2749803(+) (sbcB) [Escherichia coli strain 1000C-3]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=561318 L3Z43_RS13275 WP_000980539.1 2748376..2749803(+) (sbcB) [Escherichia coli strain 1000C-3]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581