Detailed information NTG0561281

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: L3Z43_RS00275
• Genome accession: NZ_CP091427
• Coordinates: 43820..44845 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain 1000C-3
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 38820..49845

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3Z43_RS00245	zapB	38904..39149 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
L3Z43_RS00250	rraA	39234..39719 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
L3Z43_RS00255	menA	39812..40738 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
L3Z43_RS00260	hslU	40805..42136 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
L3Z43_RS00265	hslV	42146..42676 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
L3Z43_RS00270	ftsN	42769..43728 (-)	960	WP_000068828.1	cell division protein FtsN	-
L3Z43_RS00275	cytR	43820..44845 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
L3Z43_RS00280	priA	45001..47199 (-)	2199	WP_001333520.1	primosomal protein N'	Machinery gene
L3Z43_RS00285	rpmE	47402..47614 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
L3Z43_RS00290	yiiX	47675..48283 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
L3Z43_RS00295	metJ	48467..48784 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=561281 L3Z43_RS00275 WP_000644904.1 43820..44845(-) (cytR) [Escherichia coli strain 1000C-3]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=561281 L3Z43_RS00275 WP_000644904.1 43820..44845(-) (cytR) [Escherichia coli strain 1000C-3]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628