Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   L3X15_RS01870 Genome accession   NZ_CP091423
Coordinates   371319..373418 (+) Length   699 a.a.
NCBI ID   WP_012774978.1    Uniprot ID   -
Organism   Streptococcus suis strain LSM29     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 366319..378418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3X15_RS01855 (L3X15_01855) - 369601..370200 (+) 600 WP_012774975.1 HNH/ENDO VII family nuclease -
  L3X15_RS01860 (L3X15_01860) - 370197..370607 (+) 411 WP_012774976.1 SMI1/KNR4 family protein -
  L3X15_RS01865 (L3X15_01865) - 370604..371014 (+) 411 WP_012774977.1 peptide deformylase -
  L3X15_RS01870 (L3X15_01870) clpC 371319..373418 (+) 2100 WP_012774978.1 AAA family ATPase Regulator
  L3X15_RS01875 (L3X15_01875) malQ 373601..375109 (+) 1509 WP_011922661.1 4-alpha-glucanotransferase -
  L3X15_RS01880 (L3X15_01880) glgP 375102..377366 (+) 2265 WP_012774979.1 glycogen/starch/alpha-glucan family phosphorylase -
  L3X15_RS01885 (L3X15_01885) - 377594..378301 (-) 708 WP_004194205.1 UTRA domain-containing protein -

Sequence

Protein


Download         Length: 699 a.a.        Molecular weight: 77294.17 Da        Isoelectric Point: 4.8273

>NTDB_id=561210 L3X15_RS01870 WP_012774978.1 371319..373418(+) (clpC) [Streptococcus suis strain LSM29]
MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEFAMYRQTGRLPQTEEVAQTQAKGQIKSDGILAKLGRN
LTQDAREGKLDPVIGRNKEIQETSEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTIHK
NAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHHNIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQH
PVTDIQTLEAEMAEAKQLQLEAAEKEDYEKALNEKVRIDKLQKQIDNHTEQQKVVATVNDVAQAVERMTGIPVSQMGASD
IERLKELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGNKDAIIRLDMS
EYSDRTAVSKLIGTTAGYIGYDDNSHTLTERVRRNPYSIVLMDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTII
IATSNAGFGYGMAEGEENQDIMDRIAPFFRPEFLNRFNAVIEFKHLDKDDLKAIVELLLAQVNNTLAKKGIQLTVTEAAK
EFLMEEGYDKAMGARPLRRVIENQIRDKVTDFYLDHVDVKYLEADVVDGSIQIKEQSFA

Nucleotide


Download         Length: 2100 bp        

>NTDB_id=561210 L3X15_RS01870 WP_012774978.1 371319..373418(+) (clpC) [Streptococcus suis strain LSM29]
ATGAACAACAATTTCAATAACTTTAACAATATGGACGACATTTTCAATCAACTCATGGGCAACATGGGTGGCTACAGCAC
AGAACGTCGCCGTTATTCTATCAATGGGCGTGAAGTGACACCAGAAGAATTTGCTATGTACCGTCAGACTGGTCGCCTGC
CACAGACAGAAGAAGTGGCTCAAACACAGGCTAAAGGTCAGATAAAGTCAGACGGAATTCTTGCAAAACTTGGTCGCAAT
TTGACACAAGATGCGCGTGAAGGTAAGTTGGATCCAGTCATTGGACGAAACAAGGAAATCCAAGAAACCTCTGAAATCCT
AGCTCGCCGTACGAAAAATAATCCTGTTTTGGTCGGTGATGCTGGTGTCGGAAAGACAGCGGTAGTAGAAGGATTGGCTC
AAGCCATTGTCAATGGTGATGTGCCAGCAGCCATTAAGAACAAGGAAATCATCTCCATCGACATTTCAGGCTTGGAGGCT
GGGACTCAGTATCGTGGAGCTTTTGAGGAAAATGTGCAGAATCTTGTGGATGAAGTCAAAAAAGCTGGAAATATCATTCT
CTTCTTTGATGAAATTCATCAGATTTTGGGAGCTGGTAGCACTGGCGGAGACTCAGGTTCCAAGGGTTTAGCGGATATTC
TCAAACCAGCTTTATCCCGTGGGGAATTGACGGTTATCGGTGCCACTACACAGGACGAATACCGCAATACTATTCACAAG
AATGCTGCTCTGGCTCGTCGTTTCAATGAAGTCAAGGTCAATGCTCCGTCCGCAGAGGACACCTACCAGATTTTGAAAGG
GATTAAGCCGCTTTATGAAGCCCACCACAATATTGAATTGCCAGATGAGGTTTTGAGAGCTGCGGTTGATTATTCCGTCC
AATATATTCCACAACGTAGCTTGCCTGATAAGGCTATTGACCTAGTCGATGTGACCGCTGCACATTTGGCTGCACAACAT
CCTGTGACAGATATTCAGACCTTAGAAGCAGAAATGGCTGAGGCAAAACAGTTGCAGTTGGAAGCAGCTGAAAAAGAGGA
TTATGAAAAAGCCTTGAATGAAAAAGTCCGTATTGATAAGCTACAAAAACAGATTGATAATCATACGGAGCAACAGAAAG
TGGTGGCGACTGTTAATGATGTGGCTCAGGCGGTTGAGCGGATGACAGGAATTCCAGTCTCTCAAATGGGAGCTTCTGAC
ATTGAACGACTCAAGGAATTGAAAAATCGTCTGGCAGCAAACGTTATCGGTCAAGACGATGCGGTGGAAGCTGTATCTCG
TGCCATTCGTCGGAATCGTGCAGGTTTTGATGATGGCAACCGTCCAATTGGTTCCTTCCTCTTTGTTGGTCCGACAGGTG
TGGGTAAGACAGAGTTGGCAAAACAGTTAGCACTAGACTTGTTTGGTAACAAGGATGCCATTATTCGTTTGGATATGTCT
GAATACAGCGATCGGACAGCCGTTTCCAAATTAATCGGTACCACAGCTGGCTACATTGGCTACGATGACAATTCCCATAC
TCTTACCGAGCGCGTCCGCCGCAATCCGTACTCAATCGTTCTTATGGATGAGATTGAAAAAGCTGATCCACAAGTGATTA
CCCTTCTCTTGCAAGTGCTAGATGATGGGCATTTGACTGATGGACAGGGCAACCAAGTTAACTTTAAAAATACCATTATT
ATCGCGACCTCTAATGCAGGTTTTGGTTATGGAATGGCAGAAGGTGAAGAAAATCAAGACATCATGGACCGCATCGCACC
ATTCTTCCGCCCAGAGTTTCTCAATCGTTTTAACGCAGTCATCGAGTTCAAGCATTTGGATAAAGATGATCTCAAAGCCA
TTGTAGAATTACTCTTGGCCCAGGTCAATAATACCCTGGCGAAGAAAGGCATCCAATTAACGGTAACGGAAGCTGCCAAA
GAATTCTTGATGGAAGAAGGCTATGACAAGGCCATGGGAGCCCGTCCTCTGCGCCGTGTGATTGAAAATCAGATTCGTGA
TAAGGTGACGGATTTCTATTTGGATCATGTTGATGTCAAATATCTGGAAGCGGATGTGGTTGATGGAAGCATCCAAATAA
AAGAGCAAAGCTTTGCTTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(606-676)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-249)

AAA domain (Cdc48 subfamily) (AAA_2)

(441-599)

AAA lid domain (AAA_lid_9)

(257-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

47.376

100

0.478
  clpE Streptococcus mutans UA159

49.766

91.702

0.456
  clpE Streptococcus pneumoniae Rx1

49.534

92.132

0.456
  clpE Streptococcus pneumoniae D39

49.534

92.132

0.456
  clpE Streptococcus pneumoniae R6

49.534

92.132

0.456
  clpE Streptococcus pneumoniae TIGR4

49.534

92.132

0.456
  clpC Bacillus subtilis subsp. subtilis str. 168

44.427

92.418

0.411
  clpC Streptococcus pneumoniae Rx1

41.617

95.565

0.398
  clpC Streptococcus pneumoniae D39

41.617

95.565

0.398
  clpC Streptococcus pneumoniae TIGR4

41.379

95.422

0.395
  clpC Streptococcus mutans UA159

43.366

88.412

0.383
  clpC Streptococcus thermophilus LMD-9

42.72

89.413

0.382
  clpC Streptococcus thermophilus LMG 18311

42.56

89.413

0.381
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

42.673

88.841

0.379