Detailed information NTG0056118

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PA257_RS07610
• Genome accession: NZ_AP014651
• Coordinates: 1594447..1595451 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NCGM257
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1589447..1600451

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA257_RS07580 (PA257_1593)	fghA	1589539..1590390 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
PA257_RS07585 (PA257_1594)	ispF	1590461..1590934 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PA257_RS07590 (PA257_1595)	truD	1590931..1591998 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
PA257_RS07595 (PA257_1596)	surE	1591986..1592735 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PA257_RS07600 (PA257_1597)	-	1592768..1593403 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PA257_RS07605 (PA257_1598)	-	1593449..1594342 (+)	894	WP_033991080.1	peptidoglycan DD-metalloendopeptidase family protein	-
PA257_RS07610 (PA257_1599)	rpoS	1594447..1595451 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PA257_RS07615 (PA257_1600)	fdxA	1595878..1596201 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PA257_RS07620 (PA257_1601)	mutS	1596268..1598835 (-)	2568	WP_078451731.1	DNA mismatch repair protein MutS	-
PA257_RS07625	-	1599172..1600155 (+)	984	WP_124074654.1	ATP-binding protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=56118 PA257_RS07610 WP_003113871.1 1594447..1595451(+) (rpoS) [Pseudomonas aeruginosa strain NCGM257]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=56118 PA257_RS07610 WP_003113871.1 1594447..1595451(+) (rpoS) [Pseudomonas aeruginosa strain NCGM257]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653