Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   KSO_RS12060 Genome accession   NC_020272
Coordinates   2552137..2552601 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens IT-45     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2547137..2557601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS20425 - 2547650..2548195 (-) 546 Protein_2428 hypothetical protein -
  KSO_RS12040 (KSO_012445) fadH 2548306..2549070 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  KSO_RS12045 (KSO_012450) - 2549214..2550077 (+) 864 WP_015388306.1 metallophosphoesterase -
  KSO_RS12050 (KSO_012455) - 2550152..2550646 (+) 495 WP_088037173.1 L,D-transpeptidase family protein -
  KSO_RS12055 (KSO_012460) - 2550722..2552014 (+) 1293 WP_014304918.1 MFS transporter -
  KSO_RS12060 (KSO_012465) kre 2552137..2552601 (+) 465 WP_003154622.1 YkyB family protein Regulator
  KSO_RS12065 (KSO_012470) cheV 2552644..2553555 (-) 912 WP_014304917.1 chemotaxis protein CheV -
  KSO_RS20265 (KSO_012475) - 2553744..2553905 (+) 162 WP_007409608.1 hypothetical protein -
  KSO_RS12070 (KSO_012480) - 2554106..2555325 (+) 1220 Protein_2436 aminotransferase A -
  KSO_RS12075 (KSO_012485) - 2555301..2557121 (-) 1821 WP_003154628.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=56115 KSO_RS12060 WP_003154622.1 2552137..2552601(+) (kre) [Bacillus amyloliquefaciens IT-45]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=56115 KSO_RS12060 WP_003154622.1 2552137..2552601(+) (kre) [Bacillus amyloliquefaciens IT-45]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment