Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   KSO_RS11960 Genome accession   NC_020272
Coordinates   2536145..2536741 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens IT-45     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2531145..2541741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS11935 (KSO_012335) mobB 2531521..2532042 (-) 522 WP_015388301.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  KSO_RS11940 (KSO_012340) glp 2532003..2533295 (-) 1293 WP_015388302.1 gephyrin-like molybdotransferase Glp -
  KSO_RS11945 (KSO_012345) - 2533313..2534332 (-) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  KSO_RS11950 (KSO_012350) - 2534384..2534986 (-) 603 WP_015388303.1 molybdenum cofactor guanylyltransferase -
  KSO_RS11955 (KSO_012355) - 2535132..2536124 (+) 993 WP_003154589.1 hypothetical protein -
  KSO_RS11960 (KSO_012360) rok 2536145..2536741 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  KSO_RS11965 (KSO_012365) - 2537193..2537651 (-) 459 WP_014304924.1 TlpA disulfide reductase family protein -
  KSO_RS11970 (KSO_012370) - 2537938..2538744 (+) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  KSO_RS11975 (KSO_012375) - 2538778..2539023 (-) 246 WP_003154596.1 YkuS family protein -
  KSO_RS11980 (KSO_012380) - 2539084..2540208 (-) 1125 WP_014304923.1 N-acetyldiaminopimelate deacetylase -
  KSO_RS11985 (KSO_012385) dapD 2540279..2540989 (-) 711 WP_015388304.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  KSO_RS11990 (KSO_012390) - 2541071..2541526 (-) 456 WP_003154599.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=56114 KSO_RS11960 WP_003154591.1 2536145..2536741(-) (rok) [Bacillus amyloliquefaciens IT-45]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=56114 KSO_RS11960 WP_003154591.1 2536145..2536741(-) (rok) [Bacillus amyloliquefaciens IT-45]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCTGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment