Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KSO_RS10450 Genome accession   NC_020272
Coordinates   2126579..2127013 (-) Length   144 a.a.
NCBI ID   WP_003154085.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens IT-45     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2121579..2132013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS10415 (KSO_010790) - 2121592..2121945 (+) 354 WP_003154073.1 DMT family transporter -
  KSO_RS10420 (KSO_010795) - 2121959..2122411 (-) 453 WP_015388205.1 OsmC family protein -
  KSO_RS10425 (KSO_010800) - 2122472..2123179 (-) 708 WP_015388206.1 poly-gamma-glutamate hydrolase family protein -
  KSO_RS10430 (KSO_010805) - 2123435..2123668 (-) 234 WP_031306556.1 hypothetical protein -
  KSO_RS10435 (KSO_010810) - 2123848..2125176 (+) 1329 WP_003154079.1 S8 family peptidase -
  KSO_RS10440 (KSO_010815) - 2125368..2125730 (+) 363 WP_003154082.1 hypothetical protein -
  KSO_RS10445 (KSO_010820) - 2125764..2126519 (-) 756 WP_003154084.1 YoaK family protein -
  KSO_RS10450 (KSO_010825) nucA/comI 2126579..2127013 (-) 435 WP_003154085.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KSO_RS10455 (KSO_010830) - 2127302..2128513 (+) 1212 WP_003154086.1 cytochrome P450 family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15509.42 Da        Isoelectric Point: 6.8606

>NTDB_id=56108 KSO_RS10450 WP_003154085.1 2126579..2127013(-) (nucA/comI) [Bacillus amyloliquefaciens IT-45]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAAHAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=56108 KSO_RS10450 WP_003154085.1 2126579..2127013(-) (nucA/comI) [Bacillus amyloliquefaciens IT-45]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCATGCTGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAACAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCATCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGCTATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486

Multiple sequence alignment