Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   L3I92_RS08690 Genome accession   NZ_CP091412
Coordinates   1725433..1726404 (-) Length   323 a.a.
NCBI ID   WP_000876313.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATR-20003     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1720433..1731404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3I92_RS08665 (L3I92_001731) murB 1721017..1721940 (+) 924 WP_000608439.1 UDP-N-acetylmuramate dehydrogenase -
  L3I92_RS08670 (L3I92_001732) - 1721958..1722272 (+) 315 WP_001127269.1 CHY zinc finger protein -
  L3I92_RS08675 (L3I92_001733) - 1722589..1723617 (-) 1029 WP_000754454.1 siderophore ABC transporter substrate-binding protein -
  L3I92_RS08680 (L3I92_001734) - 1723732..1724493 (-) 762 WP_000616861.1 ATP-binding cassette domain-containing protein -
  L3I92_RS08685 (L3I92_001735) - 1724490..1725446 (-) 957 WP_001245581.1 iron chelate uptake ABC transporter family permease subunit -
  L3I92_RS08690 (L3I92_001736) ceuB 1725433..1726404 (-) 972 WP_000876313.1 ABC transporter permease Machinery gene
  L3I92_RS08695 (L3I92_001737) nrdF 1726779..1727750 (-) 972 WP_000562500.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  L3I92_RS08700 (L3I92_001738) nrdE 1727868..1729973 (-) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  L3I92_RS08705 (L3I92_001739) nrdI 1729936..1730334 (-) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35544.01 Da        Isoelectric Point: 10.1963

>NTDB_id=561071 L3I92_RS08690 WP_000876313.1 1725433..1726404(-) (ceuB) [Staphylococcus aureus strain ATR-20003]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSISGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINVALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRVIVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=561071 L3I92_RS08690 WP_000876313.1 1725433..1726404(-) (ceuB) [Staphylococcus aureus strain ATR-20003]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGCTAACAATCATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTATCAGACTCACAGCAAAATATATTGTTCTCAAGTCGAATACCAAGAACAA
TGAGTATTTTAATTGCTGGAAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGTATCTTAATTGCCTTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGCATCAGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTGA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTCGCTAGTTTTACAACGTTTATTTCATTACGT
ACGAACGCCGTACAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCGAATCATTTCACAATTGTAGGAATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTATGAAAAATTAATAAATGTTGCTCTATTTATTACTGCCACAATTACGGCATTAGTCGTCGTG
ACAGTTGGAACTTTACCATTCTTAGGTTTAGTTATTCCAAATATTATTTCGATTTATAGAGGCGATCATTTGAAAAATGC
AATTCCTCATACAATGATGTTAGGTGCAATATTTGTACTGTTTTCAGATATTGTAGGTAGAGTCATCGTTTATCCTTATG
AAATAAACATTGGCTTAACGATTGGTGTGTTTGGAACAATCATTTTCCTTATCTTACTAATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.071

0.471