Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   L3I92_RS05435 Genome accession   NZ_CP091412
Coordinates   1030403..1031029 (-) Length   208 a.a.
NCBI ID   WP_001108885.1    Uniprot ID   Q2YY57
Organism   Staphylococcus aureus strain ATR-20003     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1025403..1036029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3I92_RS05415 (L3I92_001083) - 1026025..1026711 (+) 687 WP_000362215.1 DnaD domain-containing protein -
  L3I92_RS05420 (L3I92_001084) nth 1026701..1027360 (+) 660 WP_000253765.1 endonuclease III -
  L3I92_RS05425 (L3I92_001085) - 1027365..1027706 (+) 342 WP_237269233.1 YpoC family protein -
  L3I92_RS05430 (L3I92_001086) - 1028223..1030406 (-) 2184 WP_000138360.1 transglycosylase domain-containing protein -
  L3I92_RS05435 (L3I92_001087) recU 1030403..1031029 (-) 627 WP_001108885.1 Holliday junction resolvase RecU Machinery gene
  L3I92_RS05440 (L3I92_001088) - 1031568..1031918 (+) 351 WP_001000808.1 YppE family protein -
  L3I92_RS05445 (L3I92_001089) - 1031911..1032474 (+) 564 WP_000241311.1 DUF1273 domain-containing protein -
  L3I92_RS05450 (L3I92_001090) gpsB 1032488..1032832 (+) 345 WP_001286320.1 cell division regulator GpsB -
  L3I92_RS05460 (L3I92_001092) - 1033483..1034628 (+) 1146 WP_000487165.1 class I SAM-dependent RNA methyltransferase -
  L3I92_RS05465 (L3I92_001093) - 1034712..1035044 (+) 333 WP_000516800.1 DUF4889 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24427.81 Da        Isoelectric Point: 9.7084

>NTDB_id=561040 L3I92_RS05435 WP_001108885.1 1030403..1031029(-) (recU) [Staphylococcus aureus strain ATR-20003]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=561040 L3I92_RS05435 WP_001108885.1 1030403..1031029(-) (recU) [Staphylococcus aureus strain ATR-20003]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAACGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAATGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGGTATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YY57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529