Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   L3I92_RS05085 Genome accession   NZ_CP091412
Coordinates   958959..960638 (+) Length   559 a.a.
NCBI ID   WP_000942206.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATR-20003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 953959..965638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3I92_RS05055 (L3I92_001011) - 954813..955175 (+) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -
  L3I92_RS05060 (L3I92_001012) nusB 955235..955624 (+) 390 WP_000087385.1 transcription antitermination factor NusB -
  L3I92_RS05065 (L3I92_001013) xseA 955641..956978 (+) 1338 WP_001286934.1 exodeoxyribonuclease VII large subunit -
  L3I92_RS05070 (L3I92_001014) - 956971..957201 (+) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  L3I92_RS05075 (L3I92_001015) - 957179..958060 (+) 882 WP_000183379.1 polyprenyl synthetase family protein -
  L3I92_RS05080 (L3I92_001016) argR 958491..958943 (+) 453 WP_001124985.1 transcriptional regulator ArgR -
  L3I92_RS05085 (L3I92_001017) recN 958959..960638 (+) 1680 WP_000942206.1 DNA repair protein RecN Machinery gene
  L3I92_RS05090 (L3I92_001018) lpdA 960789..962210 (+) 1422 WP_001291530.1 dihydrolipoyl dehydrogenase -
  L3I92_RS05095 (L3I92_001019) - 962226..963218 (+) 993 WP_000568356.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  L3I92_RS05100 (L3I92_001020) - 963218..964201 (+) 984 WP_001096632.1 alpha-ketoacid dehydrogenase subunit beta -
  L3I92_RS05105 (L3I92_001021) - 964214..965488 (+) 1275 WP_000406833.1 dihydrolipoamide acetyltransferase family protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64274.90 Da        Isoelectric Point: 4.7972

>NTDB_id=561037 L3I92_RS05085 WP_000942206.1 958959..960638(+) (recN) [Staphylococcus aureus strain ATR-20003]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKKELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIERLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRHR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=561037 L3I92_RS05085 WP_000942206.1 958959..960638(+) (recN) [Staphylococcus aureus strain ATR-20003]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTTAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGAAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCGACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAACTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCTAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATTGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGAGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGCATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATTTCTCACTTGCCACAAGTTGCATCGATGAGTGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACATAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44