Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   KFV12_RS00400 Genome accession   NZ_CP073819
Coordinates   76047..77672 (-) Length   541 a.a.
NCBI ID   WP_254256995.1    Uniprot ID   -
Organism   Macrococcus epidermidis strain Epi3002-OL     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 71047..82672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV12_RS00380 (KFV12_00385) - 71955..72644 (+) 690 WP_254256991.1 response regulator transcription factor -
  KFV12_RS00385 (KFV12_00390) - 72634..74010 (+) 1377 WP_254256992.1 HAMP domain-containing sensor histidine kinase -
  KFV12_RS00390 (KFV12_00395) - 74038..75417 (+) 1380 WP_254256993.1 S8 family serine peptidase -
  KFV12_RS00395 (KFV12_00400) - 75506..75880 (+) 375 WP_254256994.1 hypothetical protein -
  KFV12_RS00400 (KFV12_00405) ccrB 76047..77672 (-) 1626 WP_254256995.1 recombinase family protein Machinery gene
  KFV12_RS00405 (KFV12_00410) - 77675..79042 (-) 1368 WP_254256996.1 recombinase family protein -
  KFV12_RS00410 (KFV12_00415) - 79208..81037 (-) 1830 WP_254256997.1 DUF927 domain-containing protein -
  KFV12_RS00415 (KFV12_00420) - 81089..81451 (-) 363 WP_133353691.1 hypothetical protein -
  KFV12_RS00420 (KFV12_00425) - 81593..81841 (-) 249 WP_133353692.1 hypothetical protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 61558.69 Da        Isoelectric Point: 9.1806

>NTDB_id=560952 KFV12_RS00400 WP_254256995.1 76047..77672(-) (ccrB) [Macrococcus epidermidis strain Epi3002-OL]
MNKKAAIYARVSTVAQAEEGFSIDGQIALLKDICAKNNYDVYDIYVDRGISGKNMNRPALVQMNEDARNGMFDIIMVYKA
NRLARNTSDLLKMVEEYQKYNIEFKSVSEKMDTSSATGKLLLQIMASMAEYERNQIVENVILGQTKRAKNGYYNGNSLLG
YDKIPNDKKHLTVNESEAEIVRRIFNEYANGKGYRAIANGLNKEGLRTKKGNPFDIAGVKYILNNVFYIGQIKFQQYIGW
NEKRRKGYNPNPIIAEGKQEPIIEKDLWDKVHRRMSEMSKKPQVHGKGTNVLTGLIRCPVCGHAHAAANTVNTVKGEKKK
IRYYSCSQFKNKGASVCSANSVRADLIEPYVMNRIIEVINNDKILDKVVEKANERLKEQPIQIDRNINIKKAELDELQTK
LNNLTVALASSPDLALVLKDSINEYQNNITEIENEILLLTEKLKSDHIPTISVDEVRTALEAIFKDVEHLEKHQLKALYL
SVIEEIHFRKHKEPGKKYEFFISLKITPEVLKEVFNDKQPEEAPLSASSLFLSNDILYLGI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=560952 KFV12_RS00400 WP_254256995.1 76047..77672(-) (ccrB) [Macrococcus epidermidis strain Epi3002-OL]
ATGAATAAAAAAGCAGCGATTTACGCAAGGGTTTCTACAGTAGCTCAAGCAGAAGAAGGATTTAGTATTGATGGACAAAT
AGCATTGCTAAAAGACATATGTGCTAAAAATAATTACGACGTTTATGATATTTATGTCGATAGAGGTATTAGTGGTAAGA
ACATGAATCGACCTGCACTTGTACAAATGAATGAAGATGCAAGAAACGGAATGTTCGATATCATTATGGTTTATAAAGCA
AACCGTTTAGCACGTAATACATCAGATTTATTAAAAATGGTTGAAGAATATCAAAAGTATAATATAGAGTTTAAAAGTGT
AAGTGAAAAAATGGATACCTCTAGTGCAACTGGAAAACTTTTACTTCAAATCATGGCTAGCATGGCAGAATATGAACGTA
ATCAAATTGTAGAGAACGTAATTTTAGGTCAAACAAAGAGAGCAAAAAATGGTTATTATAATGGGAATAGTTTGTTGGGT
TATGACAAGATACCTAATGATAAGAAACACTTAACGGTTAATGAATCAGAAGCTGAAATTGTTAGACGTATATTCAATGA
ATATGCCAATGGTAAAGGTTATCGTGCAATTGCGAATGGTCTGAACAAAGAAGGACTTAGAACAAAGAAAGGTAATCCAT
TCGATATTGCCGGTGTGAAGTATATCCTTAATAATGTATTCTATATAGGTCAAATCAAGTTCCAACAATACATCGGGTGG
AATGAGAAGAGACGTAAAGGCTATAATCCTAATCCTATTATCGCAGAAGGTAAGCAAGAACCAATCATTGAAAAAGATCT
GTGGGATAAAGTTCATCGCCGTATGTCTGAAATGAGCAAGAAGCCTCAAGTTCATGGCAAAGGGACAAATGTATTAACTG
GATTGATCCGATGCCCCGTCTGCGGTCATGCACATGCTGCAGCCAATACCGTCAACACGGTTAAGGGTGAGAAGAAAAAG
ATTCGTTATTACTCATGCAGTCAATTTAAAAATAAAGGTGCGTCTGTCTGTTCAGCAAATTCAGTACGAGCTGATCTTAT
AGAGCCTTACGTCATGAATAGAATCATCGAAGTAATTAACAATGATAAAATTCTGGATAAAGTAGTTGAAAAAGCGAATG
AACGACTCAAAGAACAACCCATCCAAATAGATCGTAATATCAACATCAAAAAAGCTGAACTGGACGAATTACAAACAAAG
CTAAATAACTTAACTGTAGCTTTAGCATCTTCGCCTGACTTAGCTCTCGTACTTAAAGATAGTATCAATGAATATCAGAA
TAACATCACTGAAATCGAAAACGAAATTCTATTACTCACTGAAAAGCTTAAAAGTGACCATATACCCACTATATCAGTTG
ATGAAGTTAGGACAGCACTGGAGGCTATTTTCAAAGACGTAGAACATTTGGAGAAGCATCAACTTAAAGCTCTATATCTA
TCAGTCATTGAAGAAATTCACTTTAGAAAACACAAAGAACCAGGTAAGAAATATGAGTTTTTTATATCACTCAAGATCAC
ACCAGAAGTCTTGAAAGAAGTATTCAATGATAAACAACCAGAGGAAGCGCCACTCAGCGCTTCCTCTTTATTTTTGTCTA
ATGATATTTTGTATCTAGGAATTTAG

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(176-277)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(291-355)

Resolvase, N terminal domain (Resolvase)

(5-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

53.333

99.815

0.532