Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   KFV11_RS00225 Genome accession   NZ_CP073809
Coordinates   44726..46351 (-) Length   541 a.a.
NCBI ID   WP_188017760.1    Uniprot ID   -
Organism   Macrococcus equipercicus strain Epi0143-OL     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 39726..51351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV11_RS00180 (KFV11_00180) - 40120..40404 (-) 285 WP_188017752.1 hypothetical protein -
  KFV11_RS00185 (KFV11_00185) - 40419..40643 (-) 225 WP_188017753.1 hypothetical protein -
  KFV11_RS00190 (KFV11_00190) - 40663..41139 (-) 477 WP_086041441.1 hypothetical protein -
  KFV11_RS00195 (KFV11_00195) - 41108..42022 (-) 915 WP_254249990.1 YafY family protein -
  KFV11_RS00200 (KFV11_00200) - 42202..42645 (-) 444 WP_188017755.1 RadC family protein -
  KFV11_RS00205 (KFV11_00205) - 42668..43171 (-) 504 WP_188017756.1 DUF1643 domain-containing protein -
  KFV11_RS00210 (KFV11_00210) - 43190..43549 (-) 360 WP_254249991.1 DUF960 family protein -
  KFV11_RS00215 (KFV11_00215) - 43579..43938 (-) 360 WP_188017758.1 SAUGI family uracil-DNA glycosylase inhibitor -
  KFV11_RS00220 (KFV11_00220) - 44409..44609 (+) 201 WP_254249992.1 hypothetical protein -
  KFV11_RS00225 (KFV11_00225) ccrB 44726..46351 (-) 1626 WP_188017760.1 recombinase family protein Machinery gene
  KFV11_RS00230 (KFV11_00230) - 46354..47721 (-) 1368 WP_188017761.1 recombinase family protein -
  KFV11_RS00235 (KFV11_00235) - 47934..49490 (-) 1557 WP_188017762.1 phage/plasmid primase, P4 family -
  KFV11_RS00240 (KFV11_00240) - 49483..50025 (-) 543 WP_188017763.1 hypothetical protein -
  KFV11_RS00245 (KFV11_00245) - 50012..51259 (-) 1248 WP_254249993.1 DNA polymerase -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 61632.85 Da        Isoelectric Point: 9.6345

>NTDB_id=560922 KFV11_RS00225 WP_188017760.1 44726..46351(-) (ccrB) [Macrococcus equipercicus strain Epi0143-OL]
MNKKAAIYARVSTVAQAEEGFSIDGQIALLKDVCKQNGYDVYDIYVDRGISGKNMDRPALLQMNEDARQGKFQVIAVFKT
NRLARNTSDLLKMVEEYQKNNVEFLSYSEKFDTTSAAGKLMLQIISSMAEFERNQIVENVTMGLEKRAKNGYYNGNKLLG
YDKIPNDKRHLAINESEAEIVRRIFNEYANGKGYRAIANGLNKEGLRTKKGNPFDIAGVKYILNNVFYIGQIKFQQYIGW
NEKRRKGYNPNPIIAEGKHEPIIEKDLWDKVQRRMAEMSKKPQVHGKGTNVLTGLIRCSSCGHAHAAANTVNTVKGEKKK
IRYYSCSQFKNKGAAVCSANSVRADLIEPYVMNRVIEVINNDKILEKVVARANERLQEQPVQIDRNINIKKAEMNELQTK
LNNLTVALSSSPDLAPVLKDSINEYQDNITKIENEILLLTEKLKDKHIPTISVDEVKTALKAIFKDVERLEKHQLKALYL
SVIEEIHFRKHKEPGKKYEFFITLKITPEVLKEVFNDKQPEEALLSASSLFLSNNILYLEI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=560922 KFV11_RS00225 WP_188017760.1 44726..46351(-) (ccrB) [Macrococcus equipercicus strain Epi0143-OL]
ATGAATAAAAAAGCAGCGATTTACGCAAGGGTTTCGACAGTAGCTCAAGCAGAAGAAGGATTTAGTATTGATGGACAAAT
TGCATTGCTGAAGGATGTTTGTAAACAAAATGGTTATGATGTTTATGACATATATGTAGACAGAGGAATCAGTGGTAAAA
ATATGGACCGTCCTGCATTATTACAGATGAATGAGGATGCACGTCAAGGAAAATTTCAAGTTATCGCAGTTTTTAAAACA
AATCGATTAGCTCGTAATACATCTGACTTATTAAAAATGGTAGAAGAATATCAGAAAAATAATGTTGAATTTTTAAGTTA
TTCGGAAAAATTTGATACGACATCAGCGGCGGGAAAATTAATGCTACAAATCATTTCCAGCATGGCAGAATTCGAACGTA
ACCAAATAGTGGAAAATGTAACAATGGGATTGGAAAAAAGAGCTAAAAATGGTTATTATAATGGAAATAAATTGTTAGGT
TATGATAAAATCCCTAATGATAAGAGACACTTAGCAATTAATGAATCAGAAGCTGAAATTGTTAGACGTATATTCAATGA
ATATGCCAATGGTAAAGGTTATCGTGCAATTGCGAATGGTCTGAACAAAGAAGGTCTTAGAACAAAGAAAGGTAATCCAT
TCGATATTGCCGGTGTGAAGTATATCTTGAATAATGTATTTTATATTGGTCAAATCAAGTTCCAACAGTACATTGGTTGG
AATGAGAAGAGACGTAAAGGCTATAATCCTAATCCTATTATCGCAGAAGGTAAGCACGAACCAATCATTGAAAAAGATTT
GTGGGATAAAGTTCAACGTCGTATGGCAGAAATGAGCAAGAAGCCTCAAGTTCATGGCAAAGGGACGAATGTATTAACTG
GCTTAATCCGTTGCAGTTCCTGTGGCCATGCACATGCTGCAGCCAATACCGTCAACACGGTTAAGGGTGAAAAGAAAAAG
ATACGTTATTACTCATGTAGTCAATTTAAAAATAAAGGTGCGGCTGTCTGTTCAGCAAATTCGGTACGAGCTGACCTTAT
CGAACCTTATGTCATGAATAGAGTCATCGAAGTAATTAATAATGATAAAATTCTAGAAAAAGTTGTGGCAAGAGCGAATG
AACGACTCCAAGAACAACCCGTACAGATAGATCGTAACATCAACATCAAAAAAGCTGAAATGAATGAATTACAAACAAAG
CTAAACAACTTAACTGTAGCTTTATCATCTTCGCCTGATTTAGCTCCCGTACTTAAAGATAGTATCAATGAATATCAGGA
TAACATCACTAAAATCGAAAACGAAATACTACTACTCACTGAAAAGCTTAAAGACAAACATATACCCACTATATCAGTTG
ATGAAGTAAAGACAGCACTGAAAGCTATTTTCAAAGACGTAGAACGTTTGGAAAAGCATCAACTTAAAGCTCTATATTTA
TCTGTCATTGAAGAAATTCACTTCCGTAAGCACAAAGAACCTGGCAAGAAATATGAGTTCTTTATAACACTTAAGATCAC
ACCAGAAGTATTGAAAGAAGTATTCAATGATAAACAACCAGAGGAAGCGCTACTCAGCGCTTCCTCTTTATTTTTGTCTA
ATAACATACTATATCTAGAGATATGA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(176-277)

Resolvase, N terminal domain (Resolvase)

(5-152)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(291-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

53.05

100

0.531