Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KFV10_RS11200 Genome accession   NZ_CP073808
Coordinates   2118856..2119809 (-) Length   317 a.a.
NCBI ID   WP_254253841.1    Uniprot ID   -
Organism   Macrococcoides canis strain IMD0709     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2113856..2124809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV10_RS11175 (KFV10_11155) pta 2114052..2115041 (-) 990 WP_254253839.1 phosphate acetyltransferase -
  KFV10_RS11180 (KFV10_11160) hemQ 2115193..2115942 (+) 750 WP_086043475.1 hydrogen peroxide-dependent heme synthase -
  KFV10_RS11185 (KFV10_11165) - 2115978..2117018 (-) 1041 WP_254253840.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  KFV10_RS11190 (KFV10_11170) - 2117111..2117917 (-) 807 WP_138072666.1 ABC transporter ATP-binding protein -
  KFV10_RS11195 (KFV10_11175) - 2117910..2118863 (-) 954 WP_086043478.1 iron chelate uptake ABC transporter family permease subunit -
  KFV10_RS11200 (KFV10_11180) ceuB 2118856..2119809 (-) 954 WP_254253841.1 ABC transporter permease Machinery gene
  KFV10_RS11205 (KFV10_11185) - 2119989..2121341 (+) 1353 WP_133420094.1 APC family permease -
  KFV10_RS11210 (KFV10_11190) - 2121521..2122978 (-) 1458 WP_254253842.1 APC family permease -
  KFV10_RS11215 (KFV10_11195) - 2123143..2123505 (-) 363 WP_086043481.1 DUF423 domain-containing protein -
  KFV10_RS11220 (KFV10_11200) - 2123525..2123833 (-) 309 WP_254253843.1 DUF5327 family protein -
  KFV10_RS11225 (KFV10_11205) - 2123830..2124489 (-) 660 WP_086043483.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34744.40 Da        Isoelectric Point: 10.6525

>NTDB_id=560913 KFV10_RS11200 WP_254253841.1 2118856..2119809(-) (ceuB) [Macrococcoides canis strain IMD0709]
MKIIYTILLLLILSIISMFIGVVDLSPSNLLNLNENQKNILLNSRLPRTFAIILAGVALSVAGLLMQQLTRNKFVSPTTA
GTMDFAKFGVLIAMIFFAQAPLLIKLSFSIVSAITGTMMFMWIVNRIKFKDAIFIPLVGLMLGNIVSSLATFMALRFNAV
QSISNFFVGDFSMITKGRYEVLFIIIPMVIVIYLFAHHFTIVGMGESFSKNLGISYAKMMNLGVIIAAIVSATVVVTVGV
LPFLGLIIPNIVGLFVGDHMNKALPYTALFGAILVMVADIFSRLIIFPYEIPIGLTLGIVGSVIFMAILLKRRKSYV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=560913 KFV10_RS11200 WP_254253841.1 2118856..2119809(-) (ceuB) [Macrococcoides canis strain IMD0709]
ATGAAAATAATTTACACCATACTACTGTTGCTGATTTTGTCTATAATCTCTATGTTTATTGGTGTTGTAGATTTAAGCCC
ATCAAATTTACTTAATTTAAATGAGAATCAAAAGAATATTTTGTTGAACAGTCGACTGCCGAGGACGTTTGCTATTATAT
TAGCGGGTGTGGCGTTAAGTGTAGCTGGTTTGTTAATGCAGCAGCTCACACGTAATAAATTTGTATCACCAACGACAGCA
GGTACGATGGATTTTGCGAAGTTTGGTGTTTTGATTGCAATGATATTCTTTGCACAGGCACCATTACTTATTAAATTATC
GTTCAGTATTGTTTCAGCGATTACCGGCACAATGATGTTTATGTGGATTGTCAATCGCATTAAGTTTAAGGATGCAATCT
TTATTCCGCTTGTAGGGCTCATGCTCGGTAACATCGTTTCAAGTTTAGCGACGTTTATGGCACTGCGTTTTAATGCGGTG
CAAAGTATTTCTAACTTCTTTGTGGGAGATTTCTCGATGATAACGAAAGGGCGTTATGAAGTATTATTCATTATCATTCC
GATGGTTATCGTGATTTATCTCTTTGCACATCATTTTACAATCGTCGGAATGGGTGAATCTTTCAGTAAGAACTTAGGTA
TATCTTACGCAAAGATGATGAATCTCGGTGTTATTATTGCAGCAATTGTGTCTGCAACAGTAGTGGTAACAGTCGGTGTA
TTACCATTTTTAGGATTAATTATTCCGAATATCGTTGGATTGTTTGTCGGTGATCATATGAATAAAGCATTGCCGTACAC
AGCACTGTTTGGTGCGATTCTCGTCATGGTAGCAGATATTTTCAGTCGATTGATTATCTTCCCTTACGAGATTCCAATCG
GTCTCACGCTTGGTATCGTTGGAAGTGTTATCTTTATGGCAATTCTCCTGAAGAGGAGGAAGTCATATGTCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.163

96.845

0.486