Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   KSO_RS06370 Genome accession   NC_020272
Coordinates   1253755..1254507 (+) Length   250 a.a.
NCBI ID   WP_003152643.1    Uniprot ID   A0A6A8LH02
Organism   Bacillus amyloliquefaciens IT-45     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1248755..1259507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS06355 (KSO_006480) - 1248978..1249169 (-) 192 WP_003152639.1 hypothetical protein -
  KSO_RS06360 (KSO_006485) - 1249622..1252264 (+) 2643 WP_003152640.1 valine--tRNA ligase -
  KSO_RS06365 (KSO_006490) - 1252323..1253615 (+) 1293 WP_003152642.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  KSO_RS06370 (KSO_006495) comC 1253755..1254507 (+) 753 WP_003152643.1 prepilin peptidase Machinery gene
  KSO_RS06375 (KSO_006500) - 1254633..1255634 (+) 1002 WP_003152644.1 SPOR domain-containing protein -
  KSO_RS06380 (KSO_006505) - 1255776..1256345 (+) 570 WP_014305513.1 Maf family protein -
  KSO_RS06385 (KSO_006510) radC 1256377..1257072 (+) 696 WP_007408165.1 RadC family protein -
  KSO_RS06390 (KSO_006515) mreB 1257163..1258176 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  KSO_RS06395 (KSO_006520) mreC 1258207..1259070 (+) 864 WP_003152649.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27152.80 Da        Isoelectric Point: 9.2521

>NTDB_id=56089 KSO_RS06370 WP_003152643.1 1253755..1254507(+) (comC) [Bacillus amyloliquefaciens IT-45]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=56089 KSO_RS06370 WP_003152643.1 1253755..1254507(+) (comC) [Bacillus amyloliquefaciens IT-45]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTAGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LH02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588

Multiple sequence alignment