Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L2Z46_RS08780 Genome accession   NZ_CP091373
Coordinates   1836221..1836424 (-) Length   67 a.a.
NCBI ID   WP_001984265.1    Uniprot ID   A0ABX6CCU5
Organism   Acinetobacter baumannii strain AB21-VUB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1831221..1841424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z46_RS19455 - 1832082..1832244 (-) 163 Protein_1730 single-stranded DNA-binding protein -
  L2Z46_RS08760 (L2Z46_08760) - 1832716..1833381 (-) 666 WP_000515964.1 hypothetical protein -
  L2Z46_RS08765 (L2Z46_08765) - 1833437..1833625 (-) 189 WP_000642900.1 hypothetical protein -
  L2Z46_RS08770 (L2Z46_08770) - 1833625..1834299 (-) 675 WP_000560650.1 DUF3800 domain-containing protein -
  L2Z46_RS08775 (L2Z46_08775) - 1834642..1836084 (-) 1443 WP_000003532.1 hypothetical protein -
  L2Z46_RS08780 (L2Z46_08780) ssb 1836221..1836424 (-) 204 WP_001984265.1 single-stranded DNA-binding protein Machinery gene
  L2Z46_RS08785 (L2Z46_08785) - 1836757..1839222 (-) 2466 WP_001022399.1 DUF927 domain-containing protein -
  L2Z46_RS08790 (L2Z46_08790) - 1839234..1839512 (-) 279 WP_001064707.1 hypothetical protein -
  L2Z46_RS08795 (L2Z46_08795) - 1839627..1839929 (-) 303 WP_000787402.1 hypothetical protein -
  L2Z46_RS08800 (L2Z46_08800) - 1839942..1840307 (-) 366 WP_001046482.1 hypothetical protein -
  L2Z46_RS08805 (L2Z46_08805) - 1840300..1840854 (-) 555 WP_002003158.1 BRO family protein -
  L2Z46_RS08810 (L2Z46_08810) - 1840851..1841060 (-) 210 WP_001016479.1 helix-turn-helix domain-containing protein -
  L2Z46_RS08815 (L2Z46_08815) - 1841063..1841278 (-) 216 WP_000153154.1 hypothetical protein -

Sequence

Protein


Download         Length: 67 a.a.        Molecular weight: 7488.51 Da        Isoelectric Point: 9.2521

>NTDB_id=560869 L2Z46_RS08780 WP_001984265.1 1836221..1836424(-) (ssb) [Acinetobacter baumannii strain AB21-VUB]
MPNVKKVTVMGVLGLNPETKQFSNGGSVTTFSVATTEFWKDKTTGERKEANSINLYQQSFKECCQRP

Nucleotide


Download         Length: 204 bp        

>NTDB_id=560869 L2Z46_RS08780 WP_001984265.1 1836221..1836424(-) (ssb) [Acinetobacter baumannii strain AB21-VUB]
ATGCCAAACGTAAAGAAAGTTACTGTCATGGGTGTGTTAGGTCTTAACCCTGAAACTAAACAATTTTCCAACGGTGGCAG
CGTTACGACATTCAGCGTTGCAACTACTGAGTTTTGGAAAGACAAGACCACAGGTGAGCGTAAAGAGGCTAATAGCATAA
ATCTGTATCAACAATCGTTTAAAGAGTGTTGCCAAAGGCCGTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.02

73.134

0.373