Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   L2Z46_RS05015 Genome accession   NZ_CP091373
Coordinates   1026640..1028628 (-) Length   662 a.a.
NCBI ID   WP_000211068.1    Uniprot ID   V5XVR9
Organism   Acinetobacter baumannii strain AB21-VUB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1021640..1033628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z46_RS04985 (L2Z46_04985) trmA 1022204..1023289 (+) 1086 WP_000204681.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -
  L2Z46_RS04990 (L2Z46_04990) - 1023538..1023768 (+) 231 WP_000011679.1 hypothetical protein -
  L2Z46_RS04995 (L2Z46_04995) - 1023804..1024550 (-) 747 WP_000699299.1 phosphodiester glycosidase family protein -
  L2Z46_RS05000 (L2Z46_05000) - 1024737..1025327 (+) 591 WP_001187976.1 lecithin retinol acyltransferase family protein -
  L2Z46_RS05005 (L2Z46_05005) - 1025373..1025963 (-) 591 WP_000550331.1 YceI family protein -
  L2Z46_RS05010 (L2Z46_05010) - 1026178..1026585 (+) 408 WP_000248282.1 OsmC family protein -
  L2Z46_RS05015 (L2Z46_05015) recP/tkt 1026640..1028628 (-) 1989 WP_000211068.1 transketolase Machinery gene
  L2Z46_RS05020 (L2Z46_05020) metK 1029153..1030319 (+) 1167 WP_001209543.1 methionine adenosyltransferase -
  L2Z46_RS05025 (L2Z46_05025) - 1030443..1030691 (-) 249 WP_000966850.1 hypothetical protein -
  L2Z46_RS05030 (L2Z46_05030) - 1030950..1031135 (+) 186 WP_000192615.1 hypothetical protein -
  L2Z46_RS05035 (L2Z46_05035) - 1031199..1031759 (-) 561 WP_001050729.1 FxsA family protein -
  L2Z46_RS05040 (L2Z46_05040) - 1032158..1032982 (+) 825 WP_001021781.1 OXA-51 family carbapenem-hydrolyzing class D beta-lactamase OXA-90 -
  L2Z46_RS05045 (L2Z46_05045) - 1033054..1033599 (-) 546 WP_001109741.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72258.67 Da        Isoelectric Point: 4.9694

>NTDB_id=560863 L2Z46_RS05015 WP_000211068.1 1026640..1028628(-) (recP/tkt) [Acinetobacter baumannii strain AB21-VUB]
MTTPLNERRIANAIRVLAMDAVQQANSGHPGAPMGMADIADVVWREFLNHNPNNPQWANRDRFVLSNGHGSMLQYALLHL
TGYDLSIEDLKQFRQLHSKTPGHPEYGYAPGIETTTGPLGQGIANAVGFALAEKTLAAQFNKDDLKVVDHFTYCFLGDGC
LMEGISHEVCSLAGTLQLGKLIAYYDDNGISIDGEVEGWFSDDTEERFKSYGWQVLRVDGHDADAIRQATVEAKAETQKP
TIIICKTIIGLGSPNKQGKEDCHGAPLGKDEITLTREALGWTEEAFVIPADVYAAWDAKAKGNEAEAAWNEVFAQYQAKY
PTEAAELLRRISGDLPAEFSAQADAFIRETNAKAETVATRKASQNTLQAFGPLLPELLGGSADLAGSNLTLWKGCQGVQE
NPAGNYVYYGVREFGMTAIANGVALHGGFIPYVATFLMFMEYARNAVRMSALMKQRVIHVYTHDSIGLGEDGPTHQPIEQ
IASLRGTPNLNTWRPADTVETAIAWKSALERKDGPTALIFSRQNLPFQTRTEEQIQNAAKGGYVLAQEKGELKAIIIATG
SEVSLAMEAYAQLEGVRVVSMPCAEEFMKQDAAYREAVLPAHIRARVAVEAAHVDYWWKFVGLDGKVIGMTTYGESAPAK
DLFQFFGITTEAVVAAVKELTA

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=560863 L2Z46_RS05015 WP_000211068.1 1026640..1028628(-) (recP/tkt) [Acinetobacter baumannii strain AB21-VUB]
ATGACGACCCCTTTAAACGAACGTCGTATTGCAAACGCAATTCGTGTATTGGCAATGGATGCTGTGCAACAGGCAAACTC
AGGGCATCCGGGTGCTCCAATGGGGATGGCAGATATTGCTGATGTCGTCTGGCGCGAGTTTTTAAATCACAACCCAAATA
ATCCACAATGGGCAAACCGTGACCGTTTTGTTTTATCAAATGGCCATGGTTCAATGTTGCAATATGCTTTGCTTCATTTA
ACAGGTTATGATCTTTCAATTGAAGATTTAAAACAATTCCGTCAATTGCACTCAAAAACTCCTGGTCATCCTGAATATGG
TTACGCTCCAGGGATTGAAACAACGACAGGTCCTTTGGGTCAAGGTATTGCGAACGCTGTTGGTTTTGCATTAGCAGAAA
AAACTTTAGCTGCTCAGTTCAATAAAGATGACTTAAAAGTAGTTGATCACTTCACCTATTGTTTCTTAGGTGATGGCTGT
TTAATGGAAGGTATTTCTCATGAAGTATGTTCTTTAGCAGGTACTTTACAGCTTGGTAAATTGATTGCTTATTATGATGA
CAACGGCATTTCGATTGATGGTGAAGTAGAAGGCTGGTTCAGTGATGACACTGAAGAGCGTTTCAAGTCTTATGGTTGGC
AAGTTCTTCGTGTAGATGGCCACGATGCTGATGCGATTCGTCAAGCAACAGTTGAAGCTAAAGCAGAAACTCAAAAACCA
ACGATTATTATTTGTAAAACAATTATTGGCTTAGGTTCTCCAAACAAGCAAGGTAAAGAAGACTGTCACGGTGCACCACT
TGGTAAAGATGAAATTACCTTAACTCGTGAAGCTTTAGGTTGGACTGAAGAAGCATTTGTTATTCCTGCTGATGTATATG
CTGCATGGGATGCTAAAGCAAAAGGTAATGAAGCTGAAGCAGCTTGGAATGAAGTATTTGCTCAATACCAAGCAAAATAT
CCAACGGAAGCGGCTGAGTTACTTCGTCGTATTAGCGGTGACTTACCAGCAGAATTTTCAGCTCAAGCAGATGCATTTAT
TCGTGAAACAAATGCTAAAGCTGAGACTGTAGCAACTCGTAAAGCGAGCCAAAACACATTACAAGCATTTGGTCCTTTAT
TACCTGAATTATTAGGTGGTTCTGCGGACTTGGCAGGTTCTAACTTAACACTTTGGAAAGGTTGCCAAGGCGTTCAAGAA
AACCCGGCTGGTAACTACGTATATTATGGTGTACGTGAGTTCGGTATGACTGCAATCGCTAACGGTGTTGCATTGCATGG
CGGCTTCATTCCTTACGTTGCAACGTTCTTAATGTTTATGGAATATGCACGTAATGCGGTACGTATGTCTGCATTAATGA
AACAGCGCGTGATTCATGTGTATACACATGACTCAATCGGTTTAGGTGAAGATGGTCCAACACACCAACCAATTGAACAA
ATTGCTTCTTTACGTGGCACACCAAACTTAAATACTTGGCGTCCTGCTGATACTGTAGAAACAGCAATTGCGTGGAAATC
TGCTTTAGAGCGTAAAGATGGCCCTACAGCACTTATTTTCTCTCGTCAAAACTTACCATTCCAAACGCGTACTGAAGAGC
AAATCCAAAATGCGGCAAAAGGTGGTTATGTTCTTGCTCAAGAGAAAGGTGAGTTGAAAGCAATTATTATTGCTACTGGT
TCAGAAGTTTCTTTAGCAATGGAAGCTTATGCTCAACTTGAAGGTGTTCGTGTTGTTTCTATGCCATGTGCAGAAGAGTT
CATGAAACAAGATGCTGCATATCGTGAAGCAGTATTACCAGCTCACATTCGTGCACGTGTTGCTGTAGAAGCTGCTCATG
TTGACTACTGGTGGAAGTTTGTTGGTCTTGATGGCAAAGTAATTGGTATGACAACTTATGGTGAGTCAGCACCAGCAAAA
GACTTGTTCCAATTCTTCGGTATTACAACTGAGGCTGTAGTTGCTGCGGTAAAAGAGTTAACTGCTTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(551-653)

Transketolase, pyrimidine binding domain (Transket_pyr)

(356-526)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5XVR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.496

99.547

0.473