Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KFV07_RS11425 Genome accession   NZ_CP073804
Coordinates   2170906..2171859 (-) Length   317 a.a.
NCBI ID   WP_164942889.1    Uniprot ID   A0A6G7ETT4
Organism   Macrococcoides canis strain Epi0100-OL     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2165906..2176859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV07_RS12245 - 2166635..2167090 (-) 456 Protein_2230 hypothetical protein -
  KFV07_RS11405 (KFV07_11390) - 2167179..2167895 (+) 717 WP_252456458.1 hypothetical protein -
  KFV07_RS11410 (KFV07_11395) - 2168028..2169068 (-) 1041 WP_252456457.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  KFV07_RS11415 (KFV07_11400) - 2169161..2169967 (-) 807 WP_138072666.1 ABC transporter ATP-binding protein -
  KFV07_RS11420 (KFV07_11405) - 2169960..2170913 (-) 954 WP_164942888.1 iron chelate uptake ABC transporter family permease subunit -
  KFV07_RS11425 (KFV07_11410) ceuB 2170906..2171859 (-) 954 WP_164942889.1 ABC transporter permease Machinery gene
  KFV07_RS11430 (KFV07_11415) - 2172039..2173391 (+) 1353 WP_133420094.1 APC family permease -
  KFV07_RS11435 (KFV07_11420) - 2173571..2175028 (-) 1458 WP_254256071.1 APC family permease -
  KFV07_RS11440 (KFV07_11425) - 2175163..2175525 (-) 363 WP_133420095.1 DUF423 domain-containing protein -
  KFV07_RS11445 (KFV07_11430) - 2175545..2175853 (-) 309 WP_086043482.1 DUF5327 family protein -
  KFV07_RS11450 (KFV07_11435) - 2175850..2176509 (-) 660 WP_254256072.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34753.43 Da        Isoelectric Point: 10.5554

>NTDB_id=560848 KFV07_RS11425 WP_164942889.1 2170906..2171859(-) (ceuB) [Macrococcoides canis strain Epi0100-OL]
MKIIYTILLLLILSIISMFIGVVDLSPSNLLNLDENQKNILLNSRLPRTFAIILAGVALSVAGLLMQQLTRNKFVSPTTA
GTMDFAKFGVLIAMIFFAQAPLLIKLSFSIVSAIIGTMMFMWIVNRIKFKDAIFIPLVGLMLGNIVSSLATFMALRFNAV
QSISNFFVGDFSMITKGRYEVLFIIIPMVIVIYLFAHHFTIVGMGESFSKNLGISYAKIMNLGVIIAAIVSATVVVTIGV
LPFLGLIIPNIVGLFVGDHMNKALPYTALFGAILVMVADIFSRLIIFPYEIPIGLTLGIVGSVIFMAILLKRRKSYV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=560848 KFV07_RS11425 WP_164942889.1 2170906..2171859(-) (ceuB) [Macrococcoides canis strain Epi0100-OL]
ATGAAAATAATTTACACCATACTACTGTTGCTGATTTTGTCTATAATCTCTATGTTTATTGGTGTTGTAGATTTAAGTCC
ATCAAATTTACTTAATTTAGATGAGAATCAAAAGAATATTTTGTTGAACAGTCGACTGCCGAGGACGTTTGCTATTATAT
TAGCTGGTGTGGCATTAAGTGTAGCTGGTTTGTTAATGCAGCAGCTCACACGTAATAAATTTGTATCACCAACGACAGCG
GGTACGATGGATTTTGCGAAGTTTGGTGTATTGATTGCAATGATATTCTTTGCACAGGCTCCATTACTTATTAAATTATC
GTTCAGTATTGTTTCAGCGATTATCGGTACGATGATGTTTATGTGGATTGTCAATCGCATTAAGTTTAAGGATGCAATCT
TTATTCCGCTTGTAGGGCTCATGCTCGGTAACATCGTTTCAAGTTTAGCGACGTTTATGGCACTGCGTTTTAATGCGGTG
CAAAGTATTTCTAACTTCTTTGTGGGAGATTTCTCGATGATAACGAAAGGGCGTTATGAAGTATTATTCATTATCATTCC
GATGGTTATCGTGATTTATCTCTTTGCACATCATTTTACAATCGTCGGAATGGGTGAATCTTTCAGTAAGAACTTAGGTA
TATCTTACGCAAAGATAATGAATCTGGGTGTTATTATTGCAGCAATTGTATCTGCAACAGTAGTGGTAACGATTGGGGTA
TTACCATTTTTAGGATTAATTATTCCGAATATTGTTGGATTGTTTGTCGGTGATCATATGAATAAAGCATTACCATACAC
AGCACTATTTGGTGCGATTCTCGTCATGGTAGCAGATATTTTCAGTCGATTGATCATCTTCCCTTACGAGATTCCAATCG
GTCTCACACTTGGTATCGTTGGAAGTGTTATCTTTATGGCAATTCTCCTGAAGAGGAGGAAGTCATATGTCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7ETT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.837

96.845

0.483