Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KSO_RS04590 Genome accession   NC_020272
Coordinates   908948..909592 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens IT-45     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 903948..914592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS04565 (KSO_004745) - 904390..904731 (-) 342 WP_014305721.1 hypothetical protein -
  KSO_RS04570 (KSO_004755) degQ 905197..905337 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  KSO_RS04575 (KSO_004760) - 905489..906400 (+) 912 WP_014305720.1 polyprenyl synthetase family protein -
  KSO_RS04580 (KSO_004765) comX 906400..906564 (+) 165 WP_007613432.1 competence pheromone ComX -
  KSO_RS04585 (KSO_004770) comP 906576..908867 (+) 2292 WP_015387784.1 histidine kinase Regulator
  KSO_RS04590 (KSO_004775) comA 908948..909592 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  KSO_RS04595 (KSO_004780) - 909614..909997 (+) 384 WP_003152054.1 hotdog fold thioesterase -
  KSO_RS04600 (KSO_004785) mnhG 910037..910411 (-) 375 WP_015387785.1 monovalent cation/H(+) antiporter subunit G -
  KSO_RS04605 (KSO_004790) - 910395..910679 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  KSO_RS04610 (KSO_004795) - 910679..911155 (-) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  KSO_RS04615 (KSO_004800) - 911161..912642 (-) 1482 WP_014305717.1 Na+/H+ antiporter subunit D -
  KSO_RS04620 (KSO_004805) - 912635..912976 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  KSO_RS04625 (KSO_004810) - 912976..913407 (-) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=56084 KSO_RS04590 WP_003152052.1 908948..909592(+) (comA) [Bacillus amyloliquefaciens IT-45]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=56084 KSO_RS04590 WP_003152052.1 908948..909592(+) (comA) [Bacillus amyloliquefaciens IT-45]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGTCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment