Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KFV05_RS11540 Genome accession   NZ_CP073799
Coordinates   2243954..2244907 (-) Length   317 a.a.
NCBI ID   WP_164942889.1    Uniprot ID   A0A6G7ETT4
Organism   Macrococcoides canis strain Epi0089     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2238954..2249907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV05_RS11510 (KFV05_11505) hemQ 2239286..2240035 (+) 750 WP_138072628.1 hydrogen peroxide-dependent heme synthase -
  KFV05_RS11515 (KFV05_11510) - 2240169..2240579 (+) 411 WP_254246294.1 DUF1433 domain-containing protein -
  KFV05_RS11520 (KFV05_11515) - 2240623..2241027 (+) 405 WP_254246295.1 DUF1433 domain-containing protein -
  KFV05_RS11525 (KFV05_11520) - 2241076..2242116 (-) 1041 WP_254246296.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  KFV05_RS11530 (KFV05_11525) - 2242209..2243015 (-) 807 WP_138072666.1 ABC transporter ATP-binding protein -
  KFV05_RS11535 (KFV05_11530) - 2243008..2243961 (-) 954 WP_164942888.1 iron chelate uptake ABC transporter family permease subunit -
  KFV05_RS11540 (KFV05_11535) ceuB 2243954..2244907 (-) 954 WP_164942889.1 ABC transporter permease Machinery gene
  KFV05_RS11545 (KFV05_11540) - 2245087..2246439 (+) 1353 WP_133420094.1 APC family permease -
  KFV05_RS11550 (KFV05_11545) - 2246619..2248076 (-) 1458 WP_254246297.1 APC family permease -
  KFV05_RS11555 (KFV05_11550) - 2248209..2248571 (-) 363 WP_133420095.1 DUF423 domain-containing protein -
  KFV05_RS11560 (KFV05_11555) - 2248591..2248899 (-) 309 WP_086043482.1 DUF5327 family protein -
  KFV05_RS11565 (KFV05_11560) - 2248896..2249555 (-) 660 WP_164953954.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34753.43 Da        Isoelectric Point: 10.5554

>NTDB_id=560786 KFV05_RS11540 WP_164942889.1 2243954..2244907(-) (ceuB) [Macrococcoides canis strain Epi0089]
MKIIYTILLLLILSIISMFIGVVDLSPSNLLNLDENQKNILLNSRLPRTFAIILAGVALSVAGLLMQQLTRNKFVSPTTA
GTMDFAKFGVLIAMIFFAQAPLLIKLSFSIVSAIIGTMMFMWIVNRIKFKDAIFIPLVGLMLGNIVSSLATFMALRFNAV
QSISNFFVGDFSMITKGRYEVLFIIIPMVIVIYLFAHHFTIVGMGESFSKNLGISYAKIMNLGVIIAAIVSATVVVTIGV
LPFLGLIIPNIVGLFVGDHMNKALPYTALFGAILVMVADIFSRLIIFPYEIPIGLTLGIVGSVIFMAILLKRRKSYV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=560786 KFV05_RS11540 WP_164942889.1 2243954..2244907(-) (ceuB) [Macrococcoides canis strain Epi0089]
ATGAAAATAATTTACACCATACTACTGTTGCTGATTTTGTCTATAATCTCTATGTTTATTGGTGTTGTAGATTTAAGTCC
ATCAAATTTACTTAATTTAGATGAGAATCAAAAGAATATTTTGTTGAACAGTCGACTGCCAAGGACGTTTGCTATTATAT
TAGCTGGTGTGGCATTAAGTGTAGCTGGTTTGTTAATGCAGCAGCTCACACGTAATAAATTTGTATCACCAACGACAGCG
GGTACGATGGATTTTGCGAAGTTTGGTGTATTGATTGCAATGATATTCTTTGCACAGGCTCCATTACTTATTAAATTATC
GTTCAGTATTGTTTCAGCGATTATCGGTACGATGATGTTTATGTGGATTGTCAATCGCATTAAGTTTAAGGATGCAATCT
TTATTCCGCTTGTAGGGCTCATGCTCGGTAACATCGTTTCAAGTTTAGCGACGTTTATGGCACTGCGTTTTAATGCGGTG
CAAAGTATTTCTAACTTCTTTGTGGGAGATTTCTCGATGATAACGAAAGGGCGTTATGAAGTATTATTCATTATCATTCC
GATGGTTATCGTGATTTATCTCTTTGCACATCATTTTACAATCGTCGGAATGGGTGAATCTTTCAGTAAGAACTTAGGTA
TATCTTACGCAAAGATAATGAATCTCGGTGTTATTATTGCAGCAATTGTATCTGCAACAGTAGTGGTAACGATTGGGGTA
TTACCATTTTTAGGATTAATTATTCCGAATATTGTTGGATTGTTTGTCGGTGATCATATGAATAAAGCATTACCATACAC
AGCATTATTTGGTGCGATTCTCGTCATGGTAGCAGATATTTTCAGTCGATTGATCATCTTCCCTTACGAGATTCCAATCG
GTCTCACGCTTGGTATCGTTGGAAGTGTTATCTTTATGGCAATTCTCCTGAAGAGGAGGAAGTCATATGTCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7ETT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.837

96.845

0.483