Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KFV04_RS11055 Genome accession   NZ_CP073798
Coordinates   2152681..2153634 (-) Length   317 a.a.
NCBI ID   WP_164942889.1    Uniprot ID   A0A6G7ETT4
Organism   Macrococcoides canis strain KM2258     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2147681..2158634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV04_RS11030 (KFV04_11010) - 2148339..2149283 (-) 945 WP_157891137.1 IS3 family transposase -
  KFV04_RS11035 (KFV04_11015) - 2149214..2149741 (-) 528 WP_254254923.1 transposase -
  KFV04_RS11040 (KFV04_11020) - 2149803..2150843 (-) 1041 WP_236366033.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  KFV04_RS11045 (KFV04_11025) - 2150936..2151742 (-) 807 WP_086043477.1 ABC transporter ATP-binding protein -
  KFV04_RS11050 (KFV04_11030) - 2151735..2152688 (-) 954 WP_086043478.1 iron chelate uptake ABC transporter family permease subunit -
  KFV04_RS11055 (KFV04_11035) ceuB 2152681..2153634 (-) 954 WP_164942889.1 ABC transporter permease Machinery gene
  KFV04_RS11060 (KFV04_11040) - 2153814..2155166 (+) 1353 WP_254254924.1 APC family permease -
  KFV04_RS11065 (KFV04_11045) - 2155647..2156009 (-) 363 WP_133420095.1 DUF423 domain-containing protein -
  KFV04_RS11070 (KFV04_11050) - 2156029..2156337 (-) 309 WP_086043482.1 DUF5327 family protein -
  KFV04_RS11075 (KFV04_11055) - 2156334..2156993 (-) 660 WP_086043483.1 uracil-DNA glycosylase -
  KFV04_RS11080 (KFV04_11060) thiD 2157089..2157919 (+) 831 WP_086043484.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KFV04_RS11085 (KFV04_11065) - 2158044..2158400 (+) 357 WP_254254925.1 YojF family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34753.43 Da        Isoelectric Point: 10.5554

>NTDB_id=560755 KFV04_RS11055 WP_164942889.1 2152681..2153634(-) (ceuB) [Macrococcoides canis strain KM2258]
MKIIYTILLLLILSIISMFIGVVDLSPSNLLNLDENQKNILLNSRLPRTFAIILAGVALSVAGLLMQQLTRNKFVSPTTA
GTMDFAKFGVLIAMIFFAQAPLLIKLSFSIVSAIIGTMMFMWIVNRIKFKDAIFIPLVGLMLGNIVSSLATFMALRFNAV
QSISNFFVGDFSMITKGRYEVLFIIIPMVIVIYLFAHHFTIVGMGESFSKNLGISYAKIMNLGVIIAAIVSATVVVTIGV
LPFLGLIIPNIVGLFVGDHMNKALPYTALFGAILVMVADIFSRLIIFPYEIPIGLTLGIVGSVIFMAILLKRRKSYV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=560755 KFV04_RS11055 WP_164942889.1 2152681..2153634(-) (ceuB) [Macrococcoides canis strain KM2258]
ATGAAAATAATTTACACCATACTACTGTTGCTGATTTTGTCTATAATCTCTATGTTTATTGGTGTTGTAGATTTAAGCCC
ATCAAATTTACTTAATTTAGATGAGAATCAAAAGAATATTTTGTTGAACAGTCGACTGCCGAGGACGTTTGCTATTATAT
TAGCGGGTGTGGCATTAAGTGTAGCTGGTTTGTTAATGCAGCAGCTCACACGTAATAAATTTGTATCACCAACGACAGCA
GGTACGATGGATTTTGCGAAGTTTGGTGTATTGATTGCAATGATATTCTTTGCACAGGCACCATTACTTATTAAATTATC
GTTCAGTATTGTTTCAGCGATTATCGGTACGATGATGTTTATGTGGATTGTCAATCGCATTAAGTTTAAGGATGCAATCT
TTATTCCGCTTGTAGGGCTCATGCTCGGTAACATCGTTTCAAGTTTAGCGACGTTTATGGCACTGCGTTTTAATGCGGTG
CAAAGTATTTCTAACTTCTTTGTGGGAGATTTCTCGATGATAACGAAAGGGCGTTATGAAGTATTATTCATTATCATTCC
GATGGTTATCGTGATTTATCTCTTTGCACATCATTTTACAATCGTCGGAATGGGTGAATCTTTCAGTAAGAACTTAGGTA
TATCTTACGCAAAGATAATGAATCTCGGTGTTATTATTGCAGCGATTGTATCTGCAACAGTAGTGGTAACGATTGGGGTA
TTACCATTTTTAGGATTAATTATTCCGAATATTGTTGGATTGTTTGTCGGTGATCATATGAATAAAGCATTACCGTACAC
AGCACTATTTGGTGCAATTCTCGTCATGGTAGCAGATATTTTCAGTCGATTAATCATCTTCCCTTACGAGATTCCAATCG
GTCTCACGCTTGGTATCGTTGGAAGTGTTATCTTTATGGCGATTCTCCTGAAGAGGAGGAAGTCATATGTCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7ETT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.837

96.845

0.483