Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IOMTU433_RS10410 Genome accession   NZ_AP014649
Coordinates   2193533..2194168 (-) Length   211 a.a.
NCBI ID   WP_000264033.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain IOMTU433     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2188533..2199168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOMTU433_RS10385 (IOMTU433_2085) - 2188589..2189569 (-) 981 WP_045544208.1 DNA polymerase III subunit delta' -
  IOMTU433_RS10390 (IOMTU433_2086) kdsB 2189581..2190342 (-) 762 WP_045544209.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IOMTU433_RS10395 (IOMTU433_2087) lpxK 2190352..2191362 (-) 1011 WP_000050463.1 tetraacyldisaccharide 4'-kinase -
  IOMTU433_RS10400 (IOMTU433_2088) msbA 2191365..2193092 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  IOMTU433_RS10405 (IOMTU433_2089) - 2193089..2193517 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  IOMTU433_RS10410 (IOMTU433_2090) exbB 2193533..2194168 (-) 636 WP_000264033.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IOMTU433_RS10415 (IOMTU433_2091) - 2194218..2195105 (-) 888 WP_045544210.1 ParB/RepB/Spo0J family partition protein -
  IOMTU433_RS10420 (IOMTU433_2092) - 2195102..2195884 (-) 783 WP_000057212.1 ParA family protein -
  IOMTU433_RS10425 (IOMTU433_2093) rsmG 2195906..2196538 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  IOMTU433_RS10430 (IOMTU433_2094) murU 2196626..2197315 (-) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  IOMTU433_RS10435 (IOMTU433_2095) - 2197315..2198328 (-) 1014 WP_024432223.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23223.15 Da        Isoelectric Point: 6.4861

>NTDB_id=56066 IOMTU433_RS10410 WP_000264033.1 2193533..2194168(-) (exbB) [Acinetobacter baumannii strain IOMTU433]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVIINLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=56066 IOMTU433_RS10410 WP_000264033.1 2193533..2194168(-) (exbB) [Acinetobacter baumannii strain IOMTU433]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAATAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCCATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

42.932

90.521

0.389

Multiple sequence alignment