Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KFB96_RS01270 Genome accession   NZ_CP073760
Coordinates   270522..271883 (+) Length   453 a.a.
NCBI ID   WP_213458596.1    Uniprot ID   -
Organism   MAG: Thiocapsa sp. isolate M50B4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 265522..276883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFB96_RS01250 (KFB96_01250) - 265788..267986 (-) 2199 WP_213458593.1 TRAP transporter permease -
  KFB96_RS01255 (KFB96_01255) - 268140..269012 (-) 873 WP_213458594.1 TauD/TfdA family dioxygenase -
  KFB96_RS01260 (KFB96_01260) - 269227..269542 (+) 316 Protein_250 NUDIX domain-containing protein -
  KFB96_RS01265 (KFB96_01265) - 269682..270332 (+) 651 WP_213458595.1 ferritin family protein -
  KFB96_RS01270 (KFB96_01270) radA 270522..271883 (+) 1362 WP_213458596.1 DNA repair protein RadA Machinery gene
  KFB96_RS01275 (KFB96_01275) - 272185..273465 (-) 1281 WP_213458597.1 HlyC/CorC family transporter -
  KFB96_RS01280 (KFB96_01280) - 273706..274722 (+) 1017 WP_213458598.1 recombination-associated protein RdgC -
  KFB96_RS01285 (KFB96_01285) - 274796..276076 (-) 1281 WP_213458599.1 PHB depolymerase family esterase -
  KFB96_RS01290 (KFB96_01290) - 276148..276567 (-) 420 WP_300971220.1 CopG family transcriptional regulator -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48059.15 Da        Isoelectric Point: 6.9093

>NTDB_id=560529 KFB96_RS01270 WP_213458596.1 270522..271883(+) (radA) [MAG: Thiocapsa sp. isolate M50B4]
MSNRKTRSSYVCNACGARQPKWAGQCPDCGAWNSMVETAEIARPVVRGGYAGAAESPRVESLAEVSPEDRVRIQSGIGEL
DRVLGGGLVTGSVVLIGGDPGIGKSTLLLQASASLARSLPVLYVSGEESPQQIGLRAHRLGLAGEGIRLLAETNVEAILA
AASQERPRVMVVDSIQTLYTDTLQSAPGSVSQVREAAAQLVRFAKQQDTVVFLVGHVTKDGTLAGPRVLEHMVDTVLYFE
GEPGGAFRLVRSVKNRFGAVHELGVFAMGDRGLREVKNPSAIFLSRHDEAVPGSLVMVTREGTRPLLVEVQALVDESPLA
NPRRVALGLDGNRLSMLLAVLHRHGGVAMFNQDVFVNVVGGVRITETAVDLPLVMAVLSSYRDRPLPLDLAVFGEVGLSG
EVRPVPNGPDRLREAAKHGVRRAIVPVGNVPKEGVDGLEITAVKTLAEALDGV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=560529 KFB96_RS01270 WP_213458596.1 270522..271883(+) (radA) [MAG: Thiocapsa sp. isolate M50B4]
ATGAGCAACCGAAAGACCCGCAGCAGCTATGTCTGCAACGCCTGTGGTGCGCGTCAGCCGAAGTGGGCGGGTCAGTGCCC
GGATTGCGGGGCCTGGAACAGCATGGTGGAGACCGCGGAGATCGCGCGCCCCGTCGTGCGCGGCGGCTATGCAGGCGCGG
CCGAGTCCCCGCGCGTGGAGAGTTTGGCCGAGGTCAGCCCCGAGGATCGGGTGCGCATCCAGAGCGGGATCGGCGAGCTG
GATCGGGTGCTGGGCGGCGGTCTGGTGACGGGCTCGGTGGTGTTGATCGGCGGGGATCCGGGGATCGGCAAGTCGACCCT
CTTGCTCCAGGCGAGCGCCTCGCTGGCGCGCAGCCTGCCGGTGCTCTACGTCAGCGGCGAGGAGTCGCCCCAGCAGATCG
GGCTGCGCGCCCACCGGCTCGGGCTGGCGGGCGAGGGCATCCGTCTGCTTGCCGAGACCAACGTCGAGGCGATCCTCGCG
GCTGCGTCGCAGGAGCGGCCGCGGGTGATGGTCGTCGACTCCATCCAGACCCTCTACACCGATACGCTGCAATCGGCCCC
GGGCTCGGTCTCGCAGGTGCGCGAAGCGGCGGCGCAATTGGTCCGCTTCGCCAAGCAGCAGGACACGGTCGTCTTCCTCG
TCGGCCATGTGACCAAGGACGGAACGCTCGCCGGTCCGCGGGTGTTGGAGCACATGGTCGACACCGTGCTCTATTTCGAG
GGCGAGCCGGGCGGTGCCTTCCGCTTGGTGCGCTCGGTGAAGAATCGCTTCGGTGCGGTGCACGAGCTCGGTGTGTTCGC
GATGGGCGACCGCGGGCTGCGCGAGGTGAAGAACCCCTCGGCGATCTTTCTCTCGCGCCACGACGAGGCGGTTCCGGGCA
GTCTGGTCATGGTGACGCGCGAAGGGACGCGGCCGCTCTTGGTCGAGGTGCAGGCGCTGGTGGACGAGAGCCCGCTCGCC
AATCCGCGTCGGGTGGCCTTGGGGCTCGACGGCAACCGTCTGTCGATGCTGCTGGCGGTGCTGCATCGTCACGGCGGCGT
GGCCATGTTCAACCAGGATGTCTTCGTGAACGTGGTCGGCGGGGTGCGGATCACCGAGACCGCCGTCGACCTGCCGCTCG
TCATGGCGGTGCTGTCGAGCTACCGCGACCGACCGCTTCCGCTGGATCTCGCGGTCTTCGGCGAGGTCGGCCTGTCGGGC
GAGGTGCGCCCGGTCCCCAATGGTCCGGATCGGCTGCGCGAGGCGGCCAAGCACGGTGTCCGTCGGGCGATCGTGCCGGT
CGGGAATGTCCCCAAAGAAGGGGTAGATGGGTTGGAGATCACGGCCGTGAAGACCCTCGCGGAGGCCCTCGACGGGGTCT
GA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

100

0.506
  radA Streptococcus pneumoniae Rx1

47.253

100

0.475
  radA Streptococcus pneumoniae D39

47.253

100

0.475
  radA Streptococcus pneumoniae R6

47.253

100

0.475
  radA Streptococcus pneumoniae TIGR4

47.253

100

0.475
  radA Streptococcus mitis NCTC 12261

47.033

100

0.472
  radA Streptococcus mitis SK321

47.033

100

0.472