Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KD909_RS06125 Genome accession   NZ_CP073755
Coordinates   1184430..1186127 (+) Length   565 a.a.
NCBI ID   WP_211782679.1    Uniprot ID   -
Organism   Exiguobacterium sp. PFWT01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1179430..1191127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KD909_RS06100 (KD909_06100) xseB 1179874..1180098 (+) 225 WP_012726571.1 exodeoxyribonuclease VII small subunit -
  KD909_RS06105 (KD909_06105) - 1180095..1180973 (+) 879 WP_211782677.1 polyprenyl synthetase family protein -
  KD909_RS06110 (KD909_06110) dxs 1181097..1182989 (+) 1893 WP_211782678.1 1-deoxy-D-xylulose-5-phosphate synthase -
  KD909_RS06115 (KD909_06115) - 1182996..1183811 (+) 816 WP_012726568.1 TlyA family RNA methyltransferase -
  KD909_RS06120 (KD909_06120) ahrC 1183967..1184416 (+) 450 WP_012726567.1 transcriptional regulator AhrC/ArgR -
  KD909_RS06125 (KD909_06125) recN 1184430..1186127 (+) 1698 WP_211782679.1 DNA repair protein RecN Machinery gene
  KD909_RS06130 (KD909_06130) spo0A 1186128..1186859 (+) 732 WP_074036711.1 sporulation transcription factor Spo0A -
  KD909_RS06135 (KD909_06135) - 1187518..1187766 (-) 249 WP_031423346.1 DUF2627 domain-containing protein -
  KD909_RS06140 (KD909_06140) - 1187901..1189538 (+) 1638 WP_211782680.1 sigma 54-interacting transcriptional regulator -
  KD909_RS06145 (KD909_06145) yqiS 1189660..1190556 (+) 897 WP_211782681.1 phosphate butyryltransferase -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63551.12 Da        Isoelectric Point: 4.6737

>NTDB_id=560515 KD909_RS06125 WP_211782679.1 1184430..1186127(+) (recN) [Exiguobacterium sp. PFWT01]
MLAELSIKQFAIIDELNIPFNRGMTVLTGETGAGKSILLDAIGLLVGGRGSSEFVRYGQDKAEIEGLFMIEPDHPVIEAA
EQYGIDVEDGTVILRRDLHSSGKSVCRVNGKMMPLSTLREFGRLLVDIHGQHEHQHLMDAEFHLGILDHFAEKEIGPLVE
EYQTAYAAWKQVADELKRLSQSEQELAQRMDLLSFQTKEIEAAELKVGEEQALTEERDELANFERIHQHIRLSYEAVAEE
SNGLDQIGVAMREMEEASQLSSSLSSVSETISNAYYLLEDAKFQLRDQLDSLEFDPIRLDEIESRLALFQQLKRKYGTTI
EEVITYGEQVSDELKSMTNREEHLQTLSDELIRLEQIARDAGMRLSSARKVAAESLQHAIHRELKELYMEKTAFEVRFKT
TSLKQDGLDDVEFYMMTNVGEPFKPLAKVASGGELSRVMLALKSIFSRTVGVASIIFDEVDTGVSGRVAQAMGEKIFRLS
VGSQVLCITHLAQVAAMADQHLYITKTETNERTKTNVTSLDRESRIDELGRMIAGAQMTDLTKQHVEELLEMSQQVKQKF
IKGVS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=560515 KD909_RS06125 WP_211782679.1 1184430..1186127(+) (recN) [Exiguobacterium sp. PFWT01]
ATGTTAGCAGAACTATCAATCAAACAGTTTGCGATTATTGACGAATTAAACATTCCGTTTAATCGAGGTATGACTGTGCT
CACGGGTGAGACAGGTGCCGGTAAATCGATCTTGTTGGATGCGATTGGATTGCTTGTTGGAGGACGTGGCTCAAGTGAGT
TCGTGCGATATGGTCAAGATAAAGCTGAAATCGAAGGTCTGTTCATGATTGAACCGGATCACCCGGTCATCGAAGCGGCC
GAACAATATGGCATCGATGTTGAAGATGGGACAGTCATCTTACGTCGAGACCTACATAGTAGCGGGAAGAGCGTCTGCCG
TGTGAACGGAAAAATGATGCCGCTCTCGACGTTACGGGAGTTCGGGCGGCTCCTTGTCGATATTCACGGTCAACATGAAC
ATCAACATTTAATGGATGCAGAATTTCACCTTGGTATATTAGACCATTTCGCCGAAAAAGAAATCGGTCCGTTAGTAGAG
GAATATCAAACAGCATATGCTGCCTGGAAACAAGTCGCAGATGAATTGAAGCGTCTCAGTCAAAGTGAGCAGGAGCTTGC
TCAACGAATGGATCTTTTGTCGTTTCAAACGAAAGAAATCGAAGCGGCTGAATTAAAAGTTGGTGAAGAACAGGCGTTGA
CAGAAGAGCGAGATGAATTGGCCAACTTTGAACGTATTCATCAACACATTCGTCTCTCCTATGAGGCGGTTGCCGAGGAG
TCAAATGGACTCGATCAAATTGGAGTGGCGATGCGTGAGATGGAAGAAGCGTCACAGCTCTCATCGTCTTTGTCATCTGT
ATCGGAAACCATCTCTAACGCTTATTATTTGTTGGAAGATGCCAAGTTCCAACTGCGCGACCAGTTGGATTCGCTCGAAT
TCGACCCGATTCGATTGGATGAGATCGAGTCAAGATTGGCTCTTTTCCAGCAACTGAAACGAAAGTATGGGACGACGATT
GAAGAAGTCATCACCTATGGCGAACAAGTATCGGATGAATTGAAGTCGATGACGAACCGGGAGGAGCATTTACAGACGCT
CTCAGATGAGCTCATTCGATTAGAGCAGATTGCAAGAGATGCTGGTATGAGACTCTCTTCAGCGCGTAAGGTGGCTGCGG
AGTCGCTTCAGCATGCGATTCATCGAGAACTGAAAGAACTATACATGGAAAAAACAGCGTTCGAGGTCCGTTTCAAAACC
ACATCGCTTAAACAAGATGGTTTAGATGATGTGGAGTTTTACATGATGACGAACGTTGGAGAACCGTTCAAGCCGCTCGC
AAAAGTCGCTTCAGGAGGGGAGCTTTCCCGTGTCATGCTCGCACTCAAGTCCATCTTTTCAAGAACGGTCGGCGTGGCCT
CCATTATTTTTGACGAGGTCGACACAGGAGTCTCTGGACGTGTCGCGCAGGCGATGGGTGAAAAAATCTTCCGACTTTCT
GTCGGCTCTCAAGTCCTCTGTATCACGCACTTGGCACAAGTTGCTGCGATGGCAGACCAACATCTTTACATTACGAAAAC
CGAAACGAATGAACGGACGAAAACAAATGTGACGTCCCTCGACCGTGAAAGTCGAATCGACGAATTGGGTCGCATGATTG
CTGGCGCTCAAATGACAGACTTGACGAAGCAACACGTCGAAGAATTACTTGAGATGTCACAACAAGTAAAACAGAAGTTC
ATCAAAGGAGTGTCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.819

100

0.549