Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | IOMTU433_RS03115 | Genome accession | NZ_AP014649 |
| Coordinates | 639270..639785 (-) | Length | 171 a.a. |
| NCBI ID | WP_000477156.1 | Uniprot ID | A0ABX6CJ21 |
| Organism | Acinetobacter baumannii strain IOMTU433 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 634270..644785
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IOMTU433_RS03090 (IOMTU433_0623) | - | 634817..636460 (+) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
| IOMTU433_RS03095 (IOMTU433_0624) | - | 636453..636938 (+) | 486 | WP_000935250.1 | DUF934 domain-containing protein | - |
| IOMTU433_RS03100 (IOMTU433_0625) | - | 637020..637373 (+) | 354 | WP_000457783.1 | SMR family transporter | - |
| IOMTU433_RS03105 (IOMTU433_0626) | - | 637416..637859 (-) | 444 | WP_045543725.1 | VOC family protein | - |
| IOMTU433_RS03110 (IOMTU433_0627) | - | 637986..639161 (-) | 1176 | WP_000129968.1 | thiolase family protein | - |
| IOMTU433_RS03115 (IOMTU433_0628) | fimT | 639270..639785 (-) | 516 | WP_000477156.1 | GspH/FimT family pseudopilin | Machinery gene |
| IOMTU433_RS03120 (IOMTU433_0629) | omp38 | 640167..641237 (+) | 1071 | WP_000777878.1 | outer membrane protein Omp38 | - |
| IOMTU433_RS20800 (IOMTU433_0630) | - | 641362..641520 (-) | 159 | WP_031974996.1 | hypothetical protein | - |
| IOMTU433_RS03130 (IOMTU433_0631) | - | 641524..642729 (-) | 1206 | WP_045543726.1 | RtcB family protein | - |
| IOMTU433_RS03135 (IOMTU433_0632) | - | 643006..644466 (-) | 1461 | WP_000004971.1 | amino acid permease | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19594.80 Da Isoelectric Point: 8.8196
>NTDB_id=56042 IOMTU433_RS03115 WP_000477156.1 639270..639785(-) (fimT) [Acinetobacter baumannii strain IOMTU433]
MFKSPGFTTVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTTVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=56042 IOMTU433_RS03115 WP_000477156.1 639270..639785(-) (fimT) [Acinetobacter baumannii strain IOMTU433]
ATGTTTAAATCTCCTGGTTTTACTACAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTACTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTACAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTACTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |