Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C663_RS20125 Genome accession   NC_020244
Coordinates   4044679..4045197 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis XF-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4039679..4050197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS20095 yyaJ 4040187..4041542 (+) 1356 WP_015483979.1 MFS transporter -
  C663_RS20100 (C663_4014) maa 4041576..4042130 (-) 555 WP_015385213.1 maltose acetyltransferase domain-containing protein -
  C663_RS20105 (C663_4015) yyaH 4042146..4042526 (-) 381 WP_015483980.1 VOC family protein -
  C663_RS20110 (C663_4016) ccpB 4042582..4043514 (-) 933 WP_015385215.1 transcriptional regulator CcpB -
  C663_RS20115 (C663_4017) xth 4043573..4044331 (-) 759 WP_015385216.1 exodeoxyribonuclease III -
  C663_RS20120 rpsR 4044396..4044635 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  C663_RS20125 ssbA 4044679..4045197 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  C663_RS20130 (C663_4019) rpsF 4045238..4045525 (-) 288 WP_003236622.1 30S ribosomal protein S6 -
  C663_RS20135 (C663_4020) ychF 4045636..4046736 (-) 1101 WP_015483981.1 redox-regulated ATPase YchF -
  C663_RS20140 (C663_4021) yyaE 4046863..4048866 (-) 2004 WP_015385219.1 molybdopterin-dependent oxidoreductase -
  C663_RS20145 (C663_4022) yyzM 4048917..4049123 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=56042 C663_RS20125 WP_003219228.1 4044679..4045197(-) (ssbA) [Bacillus subtilis XF-1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=56042 C663_RS20125 WP_003219228.1 4044679..4045197(-) (ssbA) [Bacillus subtilis XF-1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAACGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment