Detailed information NTG0560392

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: KFF03_RS16735
• Genome accession: NZ_CP073745
• Coordinates: 3694503..3695873 (+)
• Length: 456 a.a.
• NCBI ID: WP_255858063.1
• Uniprot ID: -
• Organism: Bacterioplanoides sp. SCSIO 12839
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3689503..3700873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFF03_RS16720 (KFF03_16630)	-	3690172..3691815 (+)	1644	WP_255858060.1	ELWxxDGT repeat protein	-
KFF03_RS16725 (KFF03_16635)	-	3691996..3693705 (+)	1710	WP_255858061.1	hybrid sensor histidine kinase/response regulator	-
KFF03_RS16730 (KFF03_16640)	-	3693685..3694341 (-)	657	WP_255858062.1	response regulator transcription factor	-
KFF03_RS16735 (KFF03_16645)	radA	3694503..3695873 (+)	1371	WP_255858063.1	DNA repair protein RadA	Machinery gene
KFF03_RS16740 (KFF03_16650)	-	3695922..3697046 (+)	1125	WP_255858064.1	efflux RND transporter periplasmic adaptor subunit	-
KFF03_RS16745 (KFF03_16655)	-	3697053..3700184 (+)	3132	WP_255858065.1	efflux RND transporter permease subunit	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 49242.62 Da
• Isoelectric Point: 7.7789

>NTDB_id=560392 KFF03_RS16735 WP_255858063.1 3694503..3695873(+) (radA) [Bacterioplanoides sp. SCSIO 12839]
MAKKKTAYVCNDCGADHTKWQGQCTGCGAWNTLQEFVVSAAKTTSREANFSGYAGAAAEQGVQRLNEVNLNEVPRFSSGM
QEFDRVLGGGLVPGSAILIGGHPGAGKSTLLLQTLCHLASQMPALYVTGEESLQQVARRAQRLGLPMDQLNMLSETNVER
LTKTLQQHQPKIVVIDSIQVMHVDGIESAPGSVSQVRESAAYLTRFAKQTNTVLFLVGHVTKDGTIAGPKVLEHMIDCSI
MLEGSGDSRFRTLRGIKNRFGAINELGVFAMLEQGLKEVKNPSSIFLSRSEEPAAGSVVMVIWEGTRPLLVEIQALVDDS
HFGHPKRVAVGLDQNRLNLLLAAMHRHGGIHLGDQDVYINVVGGVKVTETAADLALLLAALSSFRNQPLPQDLIVFGEVG
LSGEIRPVPSGQERIKEAAKHGFKRAIVPKGNMPRQPIAGMEVIGVEKLQQAIERI

Nucleotide

• Length: 1371 bp

>NTDB_id=560392 KFF03_RS16735 WP_255858063.1 3694503..3695873(+) (radA) [Bacterioplanoides sp. SCSIO 12839]
ATGGCAAAGAAAAAAACAGCGTATGTGTGTAATGACTGTGGTGCAGATCACACCAAATGGCAAGGTCAGTGCACCGGTTG
TGGCGCCTGGAATACGTTGCAGGAATTTGTGGTTTCAGCCGCCAAAACCACCAGCCGCGAGGCCAACTTTAGTGGTTACG
CCGGAGCCGCTGCCGAGCAGGGGGTACAACGCCTTAATGAAGTAAACCTCAATGAAGTGCCGCGTTTTTCCAGCGGTATG
CAGGAATTCGACCGGGTATTAGGCGGAGGGTTAGTGCCCGGCTCGGCCATTCTGATTGGCGGTCATCCGGGGGCGGGTAA
GTCCACACTACTGCTGCAAACATTGTGTCATCTGGCATCTCAAATGCCAGCCTTATACGTCACCGGCGAAGAGAGCCTGC
AGCAGGTGGCACGACGCGCTCAACGTTTAGGCCTGCCGATGGATCAGCTGAATATGCTGAGCGAAACCAATGTCGAGCGC
TTAACCAAAACCTTACAGCAGCATCAGCCCAAAATTGTGGTGATCGATTCTATTCAGGTGATGCATGTGGATGGCATTGA
ATCGGCTCCGGGCAGTGTGTCTCAGGTACGCGAAAGTGCCGCCTATTTAACCCGTTTTGCCAAACAAACCAACACGGTAT
TATTTCTGGTGGGCCATGTAACCAAAGACGGCACCATTGCTGGCCCGAAGGTGCTGGAACATATGATCGACTGCTCCATC
ATGCTGGAAGGCTCCGGCGACAGCCGTTTCCGTACGTTGCGTGGCATTAAAAACCGCTTTGGTGCTATTAACGAGCTGGG
TGTATTTGCCATGCTCGAACAAGGCTTAAAAGAAGTCAAAAACCCCAGCTCCATCTTTTTATCACGTTCCGAAGAACCGG
CGGCTGGCAGTGTTGTCATGGTGATCTGGGAAGGCACCCGACCGTTATTGGTAGAAATTCAGGCGCTGGTCGACGACAGT
CATTTTGGTCATCCAAAACGTGTGGCAGTTGGCCTGGATCAGAATCGGTTAAATTTATTACTTGCCGCCATGCACCGCCA
CGGCGGTATTCACCTCGGTGATCAGGATGTCTATATTAACGTCGTTGGTGGTGTCAAAGTCACCGAAACCGCTGCGGACC
TGGCGTTGCTGTTAGCGGCCTTGTCATCCTTCCGTAACCAACCTTTGCCACAAGACTTAATTGTGTTTGGTGAGGTGGGC
TTATCAGGAGAAATTCGGCCGGTGCCTTCCGGACAAGAACGCATTAAAGAAGCAGCCAAACACGGCTTTAAACGCGCCAT
TGTTCCGAAAGGCAATATGCCGCGTCAGCCTATTGCAGGCATGGAAGTCATCGGCGTGGAAAAACTGCAACAAGCCATCG
AACGAATCTGA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (86-224)

• Subunit ChlI of Mg-chelatase (ChlI) (347-432)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.261	100	0.487
radA	Streptococcus mitis SK321	44.323	100	0.445
radA	Streptococcus mitis NCTC 12261	44.323	100	0.445
radA	Streptococcus pneumoniae Rx1	43.939	100	0.445
radA	Streptococcus pneumoniae D39	43.939	100	0.445
radA	Streptococcus pneumoniae R6	43.939	100	0.445
radA	Streptococcus pneumoniae TIGR4	43.939	100	0.445