Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   J6O05_RS15375 Genome accession   NZ_CP073719
Coordinates   3070725..3071354 (-) Length   209 a.a.
NCBI ID   WP_000793792.1    Uniprot ID   A0A3T8SP29
Organism   Escherichia coli strain CX12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3065725..3076354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O05_RS15360 (J6O05_15225) helD 3065967..3068021 (-) 2055 WP_223566446.1 DNA helicase IV -
  J6O05_RS15365 (J6O05_15230) yccF 3068144..3068590 (+) 447 WP_001261235.1 YccF domain-containing protein -
  J6O05_RS15370 (J6O05_15235) yccS 3068600..3070762 (+) 2163 WP_072146309.1 YccS family putative transporter -
  J6O05_RS15375 (J6O05_15240) sxy/tfoX 3070725..3071354 (-) 630 WP_000793792.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  J6O05_RS15380 (J6O05_15245) sulA 3071573..3072082 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  J6O05_RS15385 (J6O05_15250) ompA 3072439..3073491 (+) 1053 WP_000750419.1 porin OmpA -
  J6O05_RS15390 (J6O05_15255) matP 3073566..3074018 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  J6O05_RS15395 (J6O05_15260) ycbZ 3074204..3075964 (+) 1761 WP_057108221.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24174.04 Da        Isoelectric Point: 9.2180

>NTDB_id=560234 J6O05_RS15375 WP_000793792.1 3070725..3071354(-) (sxy/tfoX) [Escherichia coli strain CX12]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=560234 J6O05_RS15375 WP_000793792.1 3070725..3071354(-) (sxy/tfoX) [Escherichia coli strain CX12]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGCGCCATTATCGGGATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTAGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T8SP29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995