Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   L2Z13_RS03345 Genome accession   NZ_CP091361
Coordinates   677313..679301 (-) Length   662 a.a.
NCBI ID   WP_029424388.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB177-VUB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 672313..684301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z13_RS03315 (L2Z13_03315) trmA 672877..673962 (+) 1086 WP_000204681.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -
  L2Z13_RS03320 (L2Z13_03320) - 674211..674441 (+) 231 WP_000011679.1 hypothetical protein -
  L2Z13_RS03325 (L2Z13_03325) - 674477..675223 (-) 747 WP_002056122.1 phosphodiester glycosidase family protein -
  L2Z13_RS03330 (L2Z13_03330) - 675411..676001 (+) 591 WP_029424387.1 lecithin retinol acyltransferase family protein -
  L2Z13_RS03335 (L2Z13_03335) - 676046..676636 (-) 591 WP_000550331.1 YceI family protein -
  L2Z13_RS03340 (L2Z13_03340) - 676851..677258 (+) 408 WP_000248284.1 OsmC family protein -
  L2Z13_RS03345 (L2Z13_03345) recP/tkt 677313..679301 (-) 1989 WP_029424388.1 transketolase Machinery gene
  L2Z13_RS03350 (L2Z13_03350) metK 679826..680992 (+) 1167 WP_001209544.1 methionine adenosyltransferase -
  L2Z13_RS03355 (L2Z13_03355) - 681116..681364 (-) 249 WP_000966850.1 hypothetical protein -
  L2Z13_RS03360 (L2Z13_03360) - 681623..681808 (+) 186 WP_000192619.1 hypothetical protein -
  L2Z13_RS03365 (L2Z13_03365) - 681871..682431 (-) 561 WP_001050729.1 FxsA family protein -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72245.68 Da        Isoelectric Point: 4.9694

>NTDB_id=560187 L2Z13_RS03345 WP_029424388.1 677313..679301(-) (recP/tkt) [Acinetobacter baumannii strain AB177-VUB]
MTTPLNERRIANAIRVLAMDAVQQANSGHPGAPMGMADIADVVWREFLNHNPTNPQWANRDRFVLSNGHGSMLQYALLHL
TGYDLSIEDLKQFRQLHSKTPGHPEYGYAPGIETTTGPLGQGIANAVGFALAEKTLAAQFNKDDLKVVDHFTYCFLGDGC
LMEGISHEVCSLAGTLQLGKLIAYYDDNGISIDGEVEGWFSDDTEERFKSYGWQVLRVDGHDADAIRQATVEAKAETQKP
TIIICKTIIGLGSPNKQGKEDCHGAPLGKDEITLTREALGWTEEAFVIPADVYAAWDAKAKGNEAEAAWNEVFAQYQAKY
PTEAAELLRRISGDLPAEFSAQADAFIRETNAKAETVATRKASQNTLQAFGPLLPELLGGSADLAGSNLTLWKGCQGVQE
NPAGNYVYYGVREFGMTAIANGVALHGGFIPYVATFLMFMEYARNAVRMSALMKQRVIHVYTHDSIGLGEDGPTHQPIEQ
IASLRGTPNLNTWRPADTVETAIAWKSALERKDGPTALIFSRQNLPFQTRTEEQIQNAAKGGYVLAQEKGELKAIIIATG
SEVSLAMEAYAQLEGVRVVSMPCAEEFMKQDAAYREAVLPAHIRARVAVEAAHVDYWWKFVGLDGKVIGMTTYGESAPAK
DLFQFFGITTEAVVAAVKELTA

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=560187 L2Z13_RS03345 WP_029424388.1 677313..679301(-) (recP/tkt) [Acinetobacter baumannii strain AB177-VUB]
ATGACGACCCCTTTAAACGAACGTCGTATTGCAAACGCAATTCGTGTATTGGCAATGGATGCTGTGCAACAGGCAAACTC
AGGGCATCCGGGTGCTCCAATGGGGATGGCAGATATTGCTGATGTCGTCTGGCGCGAGTTTTTAAATCACAACCCAACTA
ATCCACAATGGGCAAACCGTGACCGTTTTGTTTTATCAAATGGCCATGGTTCAATGTTGCAATATGCTTTGCTTCATTTA
ACAGGTTATGATCTTTCAATTGAAGATTTAAAACAATTCCGTCAATTGCACTCAAAAACTCCTGGTCACCCTGAATATGG
TTATGCTCCAGGAATTGAAACAACGACAGGTCCTCTGGGTCAAGGTATTGCAAACGCTGTTGGTTTTGCATTAGCAGAAA
AAACTTTAGCTGCTCAGTTCAATAAAGATGACTTAAAAGTAGTTGATCACTTCACCTATTGTTTCTTAGGCGATGGCTGT
TTAATGGAAGGTATTTCTCATGAAGTATGTTCTTTAGCAGGTACTTTACAGCTTGGTAAATTGATTGCTTATTATGATGA
CAACGGCATTTCGATTGATGGTGAAGTAGAAGGCTGGTTCAGTGATGACACTGAAGAGCGTTTCAAGTCTTATGGTTGGC
AAGTTCTTCGTGTAGATGGCCACGATGCTGATGCGATTCGCCAAGCAACAGTTGAAGCTAAAGCAGAAACTCAAAAACCA
ACGATTATTATTTGTAAAACAATTATTGGCTTAGGTTCTCCAAACAAGCAAGGTAAAGAAGACTGTCACGGTGCACCGCT
GGGTAAAGATGAAATTACCTTAACTCGTGAAGCTTTAGGTTGGACTGAAGAAGCATTTGTTATTCCTGCTGATGTATATG
CTGCATGGGATGCTAAAGCAAAAGGTAATGAAGCTGAAGCAGCTTGGAATGAAGTGTTTGCTCAATACCAAGCAAAATAT
CCAACGGAAGCAGCTGAGTTACTTCGTCGTATTAGCGGTGACTTACCAGCAGAATTTTCAGCTCAAGCAGATGCATTTAT
TCGTGAAACAAATGCTAAAGCTGAAACTGTAGCAACTCGTAAAGCGAGCCAAAACACATTACAAGCATTTGGTCCTTTAT
TACCTGAATTATTAGGTGGTTCTGCGGACTTGGCAGGTTCTAACTTGACACTTTGGAAAGGTTGCCAAGGCGTTCAAGAA
AACCCGGCTGGTAACTACGTGTATTATGGTGTACGTGAGTTCGGTATGACTGCAATCGCTAACGGTGTTGCATTGCATGG
CGGCTTCATTCCTTACGTTGCAACGTTCTTAATGTTTATGGAATATGCACGTAATGCGGTACGTATGTCTGCATTAATGA
AACAGCGCGTGATTCATGTGTATACACATGACTCAATCGGTTTAGGTGAAGATGGTCCAACACACCAACCAATTGAACAA
ATTGCTTCTTTACGTGGTACACCAAACTTAAATACTTGGCGTCCTGCTGATACTGTAGAAACAGCGATTGCGTGGAAATC
TGCTTTAGAGCGTAAAGATGGACCTACAGCACTTATTTTCTCTCGTCAAAACTTACCATTCCAAACGCGTACTGAAGAGC
AAATCCAGAATGCGGCAAAAGGTGGTTATGTTCTTGCTCAAGAGAAAGGTGAGTTGAAAGCAATTATTATTGCTACTGGT
TCAGAAGTTTCTTTAGCAATGGAAGCTTATGCTCAACTTGAAGGTGTTCGTGTTGTTTCTATGCCATGTGCAGAAGAGTT
CATGAAACAAGATGCTGCATATCGTGAAGCAGTATTACCAGCTCACATTCGTGCACGTGTTGCTGTAGAAGCTGCTCACG
TTGACTACTGGTGGAAGTTTGTTGGTCTTGATGGCAAAGTAATTGGTATGACAACTTATGGTGAGTCAGCACCAGCAAAA
GACTTGTTCCAATTCTTCGGTATTACAACTGAGGCTGTAGTTGCTGCGGTAAAAGAGTTAACTGCTTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(551-653)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-336)

Transketolase, pyrimidine binding domain (Transket_pyr)

(356-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.496

99.547

0.473