Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   L2Z14_RS09505 Genome accession   NZ_CP091360
Coordinates   1980638..1981273 (+) Length   211 a.a.
NCBI ID   WP_049581985.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB179-VUB     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1975638..1986273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z14_RS09480 (L2Z14_09480) - 1976478..1977491 (+) 1014 WP_001096106.1 phosphotransferase -
  L2Z14_RS09485 (L2Z14_09485) murU 1977491..1978180 (+) 690 WP_226200305.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  L2Z14_RS09490 (L2Z14_09490) rsmG 1978268..1978900 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  L2Z14_RS09495 (L2Z14_09495) - 1978922..1979704 (+) 783 WP_000057212.1 ParA family protein -
  L2Z14_RS09500 (L2Z14_09500) - 1979701..1980588 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  L2Z14_RS09505 (L2Z14_09505) exbB 1980638..1981273 (+) 636 WP_049581985.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L2Z14_RS09510 (L2Z14_09510) - 1981289..1981717 (+) 429 WP_000669683.1 biopolymer transporter ExbD -
  L2Z14_RS09515 (L2Z14_09515) msbA 1981714..1983441 (+) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  L2Z14_RS09520 (L2Z14_09520) lpxK 1983444..1984454 (+) 1011 WP_000050457.1 tetraacyldisaccharide 4'-kinase -
  L2Z14_RS09525 (L2Z14_09525) kdsB 1984464..1985225 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L2Z14_RS09530 (L2Z14_09530) - 1985237..1986217 (+) 981 WP_001075419.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23181.07 Da        Isoelectric Point: 6.4861

>NTDB_id=560142 L2Z14_RS09505 WP_049581985.1 1980638..1981273(+) (exbB) [Acinetobacter baumannii strain AB179-VUB]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGALSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=560142 L2Z14_RS09505 WP_049581985.1 1980638..1981273(+) (exbB) [Acinetobacter baumannii strain AB179-VUB]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGGCCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

42.932

90.521

0.389