Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   L2Z14_RS09330 Genome accession   NZ_CP091360
Coordinates   1943189..1945177 (+) Length   662 a.a.
NCBI ID   WP_000211068.1    Uniprot ID   V5XVR9
Organism   Acinetobacter baumannii strain AB179-VUB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1938189..1950177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z14_RS09300 (L2Z14_09300) - 1938221..1938766 (+) 546 WP_001109749.1 GNAT family N-acetyltransferase -
  L2Z14_RS09305 (L2Z14_09305) - 1938836..1939660 (-) 825 WP_001021775.1 OXA-51 family carbapenem-hydrolyzing class D beta-lactamase OXA-68 -
  L2Z14_RS09310 (L2Z14_09310) - 1940059..1940619 (+) 561 WP_001050729.1 FxsA family protein -
  L2Z14_RS09315 (L2Z14_09315) - 1940682..1940867 (-) 186 WP_000192621.1 hypothetical protein -
  L2Z14_RS09320 (L2Z14_09320) - 1941126..1941374 (+) 249 WP_000966850.1 hypothetical protein -
  L2Z14_RS09325 (L2Z14_09325) metK 1941498..1942664 (-) 1167 WP_001209544.1 methionine adenosyltransferase -
  L2Z14_RS09330 (L2Z14_09330) recP/tkt 1943189..1945177 (+) 1989 WP_000211068.1 transketolase Machinery gene
  L2Z14_RS09335 (L2Z14_09335) - 1945232..1945639 (-) 408 WP_000248284.1 OsmC family protein -
  L2Z14_RS09340 (L2Z14_09340) - 1945854..1946444 (+) 591 WP_071209799.1 YceI family protein -
  L2Z14_RS09345 (L2Z14_09345) - 1946490..1947080 (-) 591 WP_001187976.1 lecithin retinol acyltransferase family protein -
  L2Z14_RS09350 (L2Z14_09350) - 1947267..1948013 (+) 747 WP_000699319.1 phosphodiester glycosidase family protein -
  L2Z14_RS09355 (L2Z14_09355) - 1948049..1948279 (-) 231 WP_000011679.1 hypothetical protein -
  L2Z14_RS09360 (L2Z14_09360) trmA 1948528..1949613 (-) 1086 WP_000204687.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72258.67 Da        Isoelectric Point: 4.9694

>NTDB_id=560141 L2Z14_RS09330 WP_000211068.1 1943189..1945177(+) (recP/tkt) [Acinetobacter baumannii strain AB179-VUB]
MTTPLNERRIANAIRVLAMDAVQQANSGHPGAPMGMADIADVVWREFLNHNPNNPQWANRDRFVLSNGHGSMLQYALLHL
TGYDLSIEDLKQFRQLHSKTPGHPEYGYAPGIETTTGPLGQGIANAVGFALAEKTLAAQFNKDDLKVVDHFTYCFLGDGC
LMEGISHEVCSLAGTLQLGKLIAYYDDNGISIDGEVEGWFSDDTEERFKSYGWQVLRVDGHDADAIRQATVEAKAETQKP
TIIICKTIIGLGSPNKQGKEDCHGAPLGKDEITLTREALGWTEEAFVIPADVYAAWDAKAKGNEAEAAWNEVFAQYQAKY
PTEAAELLRRISGDLPAEFSAQADAFIRETNAKAETVATRKASQNTLQAFGPLLPELLGGSADLAGSNLTLWKGCQGVQE
NPAGNYVYYGVREFGMTAIANGVALHGGFIPYVATFLMFMEYARNAVRMSALMKQRVIHVYTHDSIGLGEDGPTHQPIEQ
IASLRGTPNLNTWRPADTVETAIAWKSALERKDGPTALIFSRQNLPFQTRTEEQIQNAAKGGYVLAQEKGELKAIIIATG
SEVSLAMEAYAQLEGVRVVSMPCAEEFMKQDAAYREAVLPAHIRARVAVEAAHVDYWWKFVGLDGKVIGMTTYGESAPAK
DLFQFFGITTEAVVAAVKELTA

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=560141 L2Z14_RS09330 WP_000211068.1 1943189..1945177(+) (recP/tkt) [Acinetobacter baumannii strain AB179-VUB]
ATGACGACCCCTTTAAACGAACGTCGTATTGCAAACGCAATTCGTGTATTGGCAATGGATGCTGTGCAACAGGCAAACTC
AGGGCATCCGGGTGCTCCAATGGGGATGGCAGATATTGCTGATGTCGTCTGGCGCGAGTTTTTAAATCACAACCCAAATA
ATCCACAATGGGCAAACCGTGACCGTTTTGTTTTATCAAATGGCCATGGTTCAATGTTGCAATATGCTTTGCTTCATTTA
ACAGGTTATGATCTTTCAATTGAAGATTTAAAACAATTCCGTCAATTGCACTCAAAAACTCCTGGTCATCCTGAATATGG
TTACGCTCCAGGGATTGAAACAACGACAGGTCCTTTGGGTCAAGGTATTGCGAACGCTGTTGGTTTTGCATTAGCAGAAA
AAACTTTAGCTGCTCAGTTCAATAAAGATGACTTAAAAGTAGTTGATCACTTTACCTATTGTTTCTTAGGTGATGGCTGT
TTAATGGAAGGTATTTCTCATGAAGTATGTTCTTTAGCAGGTACTTTACAGCTTGGTAAATTGATTGCTTATTATGATGA
CAACGGCATTTCGATTGATGGTGAAGTAGAAGGCTGGTTCAGTGATGACACTGAAGAGCGTTTCAAGTCTTATGGTTGGC
AAGTTCTTCGTGTAGATGGCCACGATGCTGATGCGATTCGTCAAGCAACAGTTGAAGCTAAAGCAGAAACTCAAAAACCA
ACGATTATTATTTGTAAAACAATTATTGGCTTAGGTTCTCCAAACAAGCAAGGTAAAGAAGACTGTCACGGTGCACCACT
GGGTAAAGATGAAATTACCTTAACTCGTGAAGCTTTAGGTTGGACTGAAGAAGCATTTGTTATTCCTGCTGATGTATATG
CTGCATGGGATGCTAAAGCAAAAGGTAATGAAGCTGAAGCAGCTTGGAATGAAGTATTTGCTCAATACCAAGCAAAATAT
CCAACGGAAGCGGCTGAGTTACTTCGTCGTATTAGCGGTGACTTACCAGCAGAATTTTCAGCTCAAGCAGATGCATTTAT
TCGTGAAACAAATGCTAAAGCTGAGACTGTAGCAACTCGTAAAGCGAGCCAAAACACATTACAAGCATTTGGTCCTTTAT
TACCTGAATTATTAGGTGGTTCTGCGGACTTGGCAGGTTCTAACTTAACACTTTGGAAAGGTTGCCAAGGCGTTCAAGAA
AACCCGGCTGGTAACTACGTGTATTATGGTGTACGCGAGTTCGGTATGACTGCAATCGCTAACGGTGTTGCATTGCATGG
TGGCTTCATTCCTTACGTTGCAACGTTCTTAATGTTTATGGAATATGCACGTAATGCAGTACGTATGTCTGCATTAATGA
AGCAACGCGTGATTCATGTATATACACATGACTCAATCGGTTTAGGTGAAGATGGTCCAACACACCAACCAATTGAACAA
ATTGCTTCTTTACGTGGCACACCAAACTTAAATACTTGGCGTCCTGCTGATACTGTAGAAACAGCAATTGCGTGGAAATC
TGCTTTAGAGCGTAAAGATGGCCCTACAGCACTTATTTTCTCTCGTCAAAACTTACCATTCCAAACGCGTACTGAAGAGC
AAATCCAAAATGCGGCAAAAGGTGGTTATGTTCTTGCTCAAGAGAAAGGTGAGTTGAAAGCAATTATTATTGCTACTGGT
TCAGAAGTTTCTTTAGCAATGGAAGCTTATGCTCAACTTGAAGGTGTTCGTGTTGTTTCTATGCCATGTGCAGAAGAGTT
CATGAAACAAGATGCTGCATATCGTGAAGCAGTATTACCAGCTCATATTCGTGCACGTGTTGCTGTAGAAGCTGCTCATG
TTGACTACTGGTGGAAGTTTGTTGGTCTTGATGGCAAAGTAATTGGTATGACAACTTATGGTGAGTCAGCACCAGCAAAA
GACTTGTTCCAATTCTTCGGTATTACAACTGAGGCTGTAGTTGCTGCGGTAAAAGAGTTAACTGCTTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(551-653)

Transketolase, pyrimidine binding domain (Transket_pyr)

(356-526)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5XVR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.496

99.547

0.473