Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   C9J31_RS21510 Genome accession   NZ_CP073713
Coordinates   4447099..4448049 (-) Length   316 a.a.
NCBI ID   WP_107926911.1    Uniprot ID   -
Organism   Lysinibacillus parviboronicapiens strain VT1065     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4442099..4453049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J31_RS21480 - 4443336..4443713 (+) 378 WP_054768229.1 inorganic diphosphatase -
  C9J31_RS21485 - 4443758..4443955 (+) 198 WP_107925387.1 hypothetical protein -
  C9J31_RS21490 - 4444008..4444322 (-) 315 WP_107926905.1 antibiotic biosynthesis monooxygenase -
  C9J31_RS21495 - 4444324..4445334 (-) 1011 WP_054769969.1 siderophore ABC transporter substrate-binding protein -
  C9J31_RS21500 - 4445395..4446156 (-) 762 WP_107926907.1 ABC transporter ATP-binding protein -
  C9J31_RS21505 - 4446153..4447106 (-) 954 WP_107948787.1 iron chelate uptake ABC transporter family permease subunit -
  C9J31_RS21510 ceuB 4447099..4448049 (-) 951 WP_107926911.1 ABC transporter permease Machinery gene
  C9J31_RS21515 - 4448338..4449393 (-) 1056 WP_107948785.1 hypothetical protein -
  C9J31_RS21520 menC 4449459..4450565 (-) 1107 WP_107948783.1 o-succinylbenzoate synthase -
  C9J31_RS21525 - 4450588..4451412 (-) 825 WP_107948781.1 GNAT family N-acetyltransferase -
  C9J31_RS21530 - 4451436..4452557 (-) 1122 WP_107948779.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34846.07 Da        Isoelectric Point: 9.9778

>NTDB_id=560139 C9J31_RS21510 WP_107926911.1 4447099..4448049(-) (ceuB) [Lysinibacillus parviboronicapiens strain VT1065]
MKIRYLLTATVVLSIVSLFIGVVDIKPSDLLDFESEETRLFLISRIPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATKLGVLISMMFFTNVTYFQKISFAFIFALAGTFLFMQILNRIKFKDAIFIPLIGLMFGNILSSITTFFAYKADII
QNISAWLQGDFSLLMKGRYELLYISVPVLIIAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALVSTTVVLTVGM
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRILIFPYEIPISMTVGVIGSAIFLIMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=560139 C9J31_RS21510 WP_107926911.1 4447099..4448049(-) (ceuB) [Lysinibacillus parviboronicapiens strain VT1065]
ATGAAAATAAGATATCTTTTAACAGCAACTGTAGTGTTGTCTATCGTGTCGTTGTTTATCGGTGTAGTAGATATTAAGCC
GAGTGACCTATTAGACTTCGAATCAGAGGAAACTAGACTATTTTTAATTAGTCGTATACCGAGACTTGTGGCAATTTTGC
TAGCGGGGGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTGTCGCCAACGACAGCA
GGAACTTTAGACGCAACGAAATTAGGAGTATTAATTTCAATGATGTTTTTCACTAATGTCACGTACTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACGTTTCTCTTTATGCAAATATTAAATCGAATAAAGTTCAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTCGGGAATATTTTATCGTCGATTACGACATTCTTTGCGTATAAGGCAGATATTATC
CAAAACATTTCTGCGTGGTTACAGGGAGATTTCTCATTATTGATGAAAGGTCGTTACGAACTTTTATACATAAGTGTACC
CGTGCTGATAATAGCTTACATTTATGCGAACCGCTTCACAGTAGCTGGAATGGGTGAGGATTTTGCAAAAAATCTTGGTC
TTTCCTATAAATTTGTTGTGAATTTAGGGTTAGTGTTGGTAGCACTTGTTTCAACAACAGTGGTATTGACGGTTGGGATG
ATTCCATTCCTTGGATTAATCATTCCTAATATTATTTCGCTATTCAAAGGGGACAATTTGGCGAAGACATTGCCGCATAC
AGCATTACTTGGTATGTCATTCTTATTATTCTGTGATATTTTAGGGCGTATTCTTATTTTCCCATATGAAATTCCGATTA
GTATGACAGTTGGTGTCATCGGAAGTGCAATCTTCCTAATTATGTTATTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528