Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   C9J31_RS14330 Genome accession   NZ_CP073713
Coordinates   2977597..2979297 (-) Length   566 a.a.
NCBI ID   WP_107949426.1    Uniprot ID   -
Organism   Lysinibacillus parviboronicapiens strain VT1065     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2972597..2984297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J31_RS14310 - 2972623..2973351 (-) 729 WP_107923886.1 glycerophosphodiester phosphodiesterase -
  C9J31_RS14315 - 2973344..2974915 (-) 1572 WP_107949427.1 FapA family protein -
  C9J31_RS14320 spo0A 2975379..2976170 (-) 792 WP_107923884.1 sporulation transcription factor Spo0A -
  C9J31_RS14325 - 2976527..2977474 (-) 948 WP_107923883.1 SpoIVB peptidase S55 domain-containing protein -
  C9J31_RS14330 recN 2977597..2979297 (-) 1701 WP_107949426.1 DNA repair protein RecN Machinery gene
  C9J31_RS14335 argR 2979441..2979890 (-) 450 WP_107923881.1 transcriptional regulator ArgR -
  C9J31_RS14340 - 2979991..2980809 (-) 819 WP_107949423.1 TlyA family RNA methyltransferase -
  C9J31_RS14345 dxs 2980809..2982710 (-) 1902 WP_107949422.1 1-deoxy-D-xylulose-5-phosphate synthase -
  C9J31_RS14350 - 2982875..2983756 (-) 882 WP_107949420.1 polyprenyl synthetase family protein -
  C9J31_RS14355 xseB 2983760..2983993 (-) 234 WP_054767489.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63790.56 Da        Isoelectric Point: 4.6704

>NTDB_id=560129 C9J31_RS14330 WP_107949426.1 2977597..2979297(-) (recN) [Lysinibacillus parviboronicapiens strain VT1065]
MLRELSIRNFAIIEDLTVSFSDGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGAKKAELGGLFQIASPAHPVYKK
LDDAGIEIEEDTIILRRDLNDTGKSICRVNGKLVPLSVLRDVGASLIDIHGQHENQELMDEKQHIHLLDQFAEDQLAPIQ
DKYSKQYDEYRALKKELASISIDEQLMAQRIDLYQFQMKELEDANLKLGEEDDLLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGNAMGALEDAATIDEQFKEASEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQNMKRKYGAT
VEDILAYYEKIKTELNELLNRDEILQVKERKVLEMEEVLYDFAAELSNVRKVAAHELSEAIMAELRELHMEKAKFIVNFD
ELSYFDAYGKDQVIFYISTNVGEPPKFLPKIASGGELSRMMLALKTIFSSSNGVTSIIFDEVDTGVSGRVAQAIAEKIAA
VSINSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLAEIDTHARIEEVSRMMSGAEITDLTLQHATELLNMANERKK
HMRSII

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=560129 C9J31_RS14330 WP_107949426.1 2977597..2979297(-) (recN) [Lysinibacillus parviboronicapiens strain VT1065]
GTGTTAAGAGAGCTTAGTATTCGCAACTTTGCCATCATTGAGGATTTAACAGTCAGTTTTTCAGATGGTTTAACGGTGTT
AACAGGTGAAACAGGAGCAGGAAAATCAATTATTATTGATGCGGTGCATTTGCTTGCTGGTGGGAGAGGGAATTCAGAAT
TTATTCGCCATGGCGCTAAAAAAGCAGAGTTAGGTGGATTATTTCAAATTGCTAGTCCTGCACACCCTGTATACAAAAAA
TTAGATGATGCAGGTATTGAAATAGAAGAAGATACCATTATTTTACGTCGTGATTTAAATGACACCGGAAAAAGTATTTG
TCGTGTAAATGGCAAGCTTGTGCCATTATCTGTTTTACGTGATGTTGGTGCCAGTCTTATTGATATTCATGGACAGCATG
AAAACCAAGAATTAATGGATGAAAAGCAACACATTCATTTACTTGATCAATTTGCTGAGGACCAGCTTGCACCAATTCAA
GATAAGTACAGTAAGCAATATGATGAATATCGTGCATTGAAAAAAGAATTGGCATCGATTTCTATTGATGAGCAGTTAAT
GGCACAGCGTATTGATTTGTACCAGTTCCAAATGAAGGAGCTAGAGGATGCAAATTTAAAGCTAGGTGAGGAAGACGATC
TCCTCGATGAGCGTCGCCGTCTCATGAATTTCAATAAAATTTTTGAACGATCTAGTGCGGCCTATGAAGCCATCCAAGGC
GAAACAAAGGGCCTGGATTGGATCGGCAATGCAATGGGCGCATTAGAGGATGCGGCAACCATCGATGAACAATTTAAAGA
GGCTTCTGAAGCGGTTACAACCGCGTTTTATGCTTTGCAGGATGCAGCCTATCAGGTGAAAAATGTCCTTGATGAACTAG
AATTTGATCCAGCCCGATTAAATGAAGTCGAGCAACGGCTTGCACTATTACAAAACATGAAGCGTAAATATGGAGCAACT
GTTGAAGATATTTTAGCCTATTATGAAAAAATTAAAACTGAGCTAAACGAGCTATTAAATCGTGATGAAATTTTACAGGT
GAAAGAACGCAAAGTTCTTGAGATGGAAGAGGTTTTATATGATTTTGCAGCTGAACTATCTAATGTACGTAAAGTAGCTG
CACATGAATTAAGTGAAGCCATTATGGCTGAGTTACGTGAATTACATATGGAAAAAGCAAAGTTTATTGTAAATTTTGAT
GAATTATCATATTTCGATGCATATGGGAAAGATCAAGTTATATTTTATATTTCAACGAATGTTGGTGAGCCACCAAAATT
TTTACCGAAAATTGCCTCTGGTGGAGAATTATCGCGTATGATGCTCGCGTTGAAGACTATTTTCTCTTCATCCAATGGTG
TAACATCCATTATTTTTGATGAGGTTGATACTGGTGTAAGCGGTCGAGTGGCACAAGCCATTGCTGAAAAAATTGCTGCC
GTTTCCATTAATTCGCAAGTTTTATGTATTTCACATTTACCACAGGTGGCTGCAATGGCAGATCATCATTATTTTATAAA
AAAAGAAGTCGAACATGATCGTACCTTTACGTCATTGGCAGAAATAGATACACATGCTCGTATTGAAGAAGTAAGTCGTA
TGATGTCAGGTGCAGAAATTACTGACTTAACTTTACAGCATGCAACAGAGCTTTTAAACATGGCCAATGAGCGAAAAAAG
CACATGCGTAGCATAATTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.686

100

0.537