Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C9J31_RS06005 Genome accession   NZ_CP073713
Coordinates   1280760..1281827 (+) Length   355 a.a.
NCBI ID   WP_107947835.1    Uniprot ID   -
Organism   Lysinibacillus parviboronicapiens strain VT1065     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1275760..1286827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J31_RS05980 - 1276504..1276761 (+) 258 WP_107923027.1 DUF3243 domain-containing protein -
  C9J31_RS05985 - 1276988..1277776 (+) 789 WP_107923293.1 DUF3388 domain-containing protein -
  C9J31_RS05990 - 1277802..1278695 (+) 894 WP_107923026.1 RodZ domain-containing protein -
  C9J31_RS05995 pgsA 1278743..1279321 (+) 579 WP_054767153.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C9J31_RS06000 cinA 1279339..1280598 (+) 1260 WP_107947833.1 competence/damage-inducible protein A Machinery gene
  C9J31_RS06005 recA 1280760..1281827 (+) 1068 WP_107947835.1 recombinase RecA Machinery gene
  C9J31_RS06010 rny 1282608..1284167 (+) 1560 WP_107923023.1 ribonuclease Y -
  C9J31_RS06015 - 1284425..1285129 (+) 705 WP_107923022.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  C9J31_RS06020 - 1285179..1285841 (+) 663 WP_107923292.1 CpsD/CapB family tyrosine-protein kinase -
  C9J31_RS06025 - 1285880..1286635 (+) 756 WP_338016320.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38233.43 Da        Isoelectric Point: 4.6809

>NTDB_id=560121 C9J31_RS06005 WP_107947835.1 1280760..1281827(+) (recA) [Lysinibacillus parviboronicapiens strain VT1065]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIVEVYGPESSGKTTVALHAIAE
VQATGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIMGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAVLDDIANK
IRASYGIASSAYTIAAHDEDEEMDEELMLLLEDEK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=560121 C9J31_RS06005 WP_107947835.1 1280760..1281827(+) (recA) [Lysinibacillus parviboronicapiens strain VT1065]
ATGAGTGATCGTAAAGCGGCCTTAGAACAGGCTTTAAAGCAAATTGAAAAGAATTTTGGGAAAGGTTCTATCATGAAGCT
TGGTGAAAAAACAGATTTAGAAATTGCAACATCTTCAAGTGGTTCGCTAGCACTTGATGCGGCATTAGGTGTCGGTGGTT
ATCCTCGTGGCCGTATTGTTGAAGTATATGGTCCGGAATCATCAGGTAAAACAACAGTTGCCTTACATGCCATTGCAGAA
GTACAAGCAACGGGTGGGCAAGCGGCATTTATCGATGCTGAGCATGCATTAGATCCAATCTATGCACAAAAATTAGGCGT
TAACATTGATGAGTTATTATTATCGCAACCAGATACAGGAGAACAAGCGCTTGAAATTGCAGAAGCATTAGTGCGCAGTG
GTGCTATCGATATCATTGTTATTGACTCAGTAGCAGCATTAGTTCCGAAAGCAGAAATCGAAGGAGATATGGGTGATTCG
CACGTTGGTTTACAAGCACGTTTAATGTCTCAAGCTTTACGTAAGCTTTCTGGTGCAATCAACAAATCAAAAACGATTGC
CATTTTCATTAACCAAATTCGTGAAAAAATCGGTGTCATGTTCGGGAATCCAGAAACAACACCTGGTGGACGTGCGCTTA
AATTCTATAGCTCTGTGCGTTTAGAAGTACGTCGTGCAGAAGCTATTAAACAAGGCAATGACATTATGGGTAACCGTACG
AAAATTAAAATTGTGAAAAACAAAGTAGCTCCACCATTCCGTACAGCGGAAGTTGATATTATGTATGGTGAAGGGATTTC
AAAAGAGGGCGAAACAGTCGATTTAGGTGTTGAGTTAGATATCGTGCAAAAAAGCGGCTCTTGGTATGCCTACGGTGATG
AGCGTCTAGGACAAGGCCGAGAAAATGCAAAACAATACTTGAAGGAAAACCCTGCTGTCTTAGACGATATTGCCAATAAA
ATCCGTGCTTCCTACGGTATTGCTTCATCCGCATATACAATTGCGGCACATGATGAAGACGAGGAAATGGATGAAGAATT
AATGCTTCTTCTTGAAGACGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

92.113

0.797
  recA Latilactobacillus sakei subsp. sakei 23K

72.365

98.873

0.715
  recA Streptococcus pneumoniae Rx1

64.11

100

0.659
  recA Streptococcus pneumoniae D39

64.11

100

0.659
  recA Streptococcus pneumoniae R6

64.11

100

0.659
  recA Streptococcus pneumoniae TIGR4

64.11

100

0.659
  recA Streptococcus mitis NCTC 12261

64.365

100

0.656
  recA Streptococcus mutans UA159

64.444

100

0.654
  recA Streptococcus mitis SK321

63.435

100

0.645
  recA Streptococcus pyogenes NZ131

63.662

100

0.637
  recA Lactococcus lactis subsp. cremoris KW2

67.273

92.958

0.625
  recA Neisseria gonorrhoeae strain FA1090

63.793

98.028

0.625
  recA Neisseria gonorrhoeae MS11

63.793

98.028

0.625
  recA Neisseria gonorrhoeae MS11

63.793

98.028

0.625
  recA Acinetobacter baylyi ADP1

62.682

96.62

0.606
  recA Glaesserella parasuis strain SC1401

61.272

97.465

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

95.775

0.594
  recA Acinetobacter baumannii D1279779

60

98.592

0.592
  recA Helicobacter pylori strain NCTC11637

64.615

91.549

0.592
  recA Ralstonia pseudosolanacearum GMI1000

64.024

92.394

0.592
  recA Helicobacter pylori 26695

64.308

91.549

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.497

91.831

0.583
  recA Vibrio cholerae strain A1552

64.062

90.141

0.577
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.062

90.141

0.577
  recA Pseudomonas stutzeri DSM 10701

62.195

92.394

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

90.986

0.569