Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   C9J31_RS06000 Genome accession   NZ_CP073713
Coordinates   1279339..1280598 (+) Length   419 a.a.
NCBI ID   WP_107947833.1    Uniprot ID   -
Organism   Lysinibacillus parviboronicapiens strain VT1065     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1274339..1285598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J31_RS05970 - 1274432..1275733 (+) 1302 WP_107947829.1 pitrilysin family protein -
  C9J31_RS05975 - 1275730..1276458 (+) 729 WP_107947831.1 SDR family oxidoreductase -
  C9J31_RS05980 - 1276504..1276761 (+) 258 WP_107923027.1 DUF3243 domain-containing protein -
  C9J31_RS05985 - 1276988..1277776 (+) 789 WP_107923293.1 DUF3388 domain-containing protein -
  C9J31_RS05990 - 1277802..1278695 (+) 894 WP_107923026.1 RodZ domain-containing protein -
  C9J31_RS05995 pgsA 1278743..1279321 (+) 579 WP_054767153.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C9J31_RS06000 cinA 1279339..1280598 (+) 1260 WP_107947833.1 competence/damage-inducible protein A Machinery gene
  C9J31_RS06005 recA 1280760..1281827 (+) 1068 WP_107947835.1 recombinase RecA Machinery gene
  C9J31_RS06010 rny 1282608..1284167 (+) 1560 WP_107923023.1 ribonuclease Y -
  C9J31_RS06015 - 1284425..1285129 (+) 705 WP_107923022.1 Wzz/FepE/Etk N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45103.41 Da        Isoelectric Point: 4.5748

>NTDB_id=560120 C9J31_RS06000 WP_107947833.1 1279339..1280598(+) (cinA) [Lysinibacillus parviboronicapiens strain VT1065]
MNAEILAVGSELLLGQITNTNAQFISSQLSELGINVFYHTVVGDNSTRLEEAITVAESRADLIIFSGGLGPTKDDLTKET
IARHLGIDLAFDEVALTYIEQFFAKRGRPMTENNRKQALVLTGSEVLANHHGMAPGMILTKDGRTYILLPGPPKELEPMF
QFEAKPKLGAMLNDGGVIVSHVMRFYGIGEAELEVCVQDILDTQTNPTVAPLASDGEVTLRVTAKAETEGEARQLIAAKV
AEIQAIVGDYQYGIDDDSLASKTVEMLLDNQLTISAAESLTAGLFQSELAEIPGVGTALIGGVVTYTEQAKVKQLGISQE
ILDSHGIVSSECAGAMASAVREKFGTDIGIGLTGAAGPTAHDHQPVGTVWIGIAIGDEEPITYLLHLSGMRNTNRLRAVK
FTCHYLMQQLEERGFMKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=560120 C9J31_RS06000 WP_107947833.1 1279339..1280598(+) (cinA) [Lysinibacillus parviboronicapiens strain VT1065]
ATGAACGCAGAAATTCTTGCAGTTGGCTCAGAGTTATTGCTTGGACAAATCACAAATACAAATGCGCAGTTTATCTCAAG
CCAGTTATCGGAGCTAGGGATTAACGTGTTTTATCACACTGTTGTTGGAGACAATTCAACAAGATTAGAAGAGGCAATCA
CGGTAGCAGAATCTCGTGCAGATTTAATTATTTTCTCAGGCGGCCTTGGTCCTACGAAGGATGATTTAACAAAGGAAACA
ATCGCGCGTCATTTAGGTATCGATTTAGCATTTGATGAAGTAGCTCTTACCTATATCGAACAGTTTTTTGCAAAACGAGG
GCGGCCAATGACGGAAAATAACCGTAAACAGGCACTGGTATTAACCGGTAGTGAAGTGCTAGCAAACCATCATGGTATGG
CCCCTGGCATGATACTGACGAAGGATGGACGTACGTACATTCTACTTCCTGGTCCTCCTAAAGAGCTGGAACCCATGTTC
CAATTTGAAGCAAAGCCAAAGCTTGGTGCGATGCTCAATGATGGTGGCGTGATTGTGTCTCATGTGATGCGCTTTTATGG
TATTGGAGAAGCAGAGCTAGAGGTATGTGTGCAGGATATTCTAGATACACAGACAAATCCAACAGTTGCCCCGCTTGCAT
CTGACGGTGAAGTCACATTGCGTGTAACGGCGAAGGCAGAGACTGAGGGGGAAGCCCGACAATTGATTGCAGCGAAAGTG
GCTGAAATTCAGGCAATTGTTGGAGACTATCAATATGGTATTGATGATGATTCACTTGCCTCTAAAACGGTAGAAATGCT
GTTAGATAATCAATTAACAATTTCAGCGGCTGAAAGCTTAACAGCCGGTTTATTTCAGTCAGAACTGGCTGAGATTCCAG
GAGTAGGTACAGCGCTCATTGGTGGTGTTGTCACATATACAGAACAGGCGAAGGTAAAGCAACTTGGTATCTCACAAGAA
ATATTAGATTCACATGGCATTGTAAGTAGTGAATGCGCTGGGGCAATGGCTAGTGCTGTACGTGAAAAGTTCGGTACAGA
TATTGGCATCGGCCTAACTGGTGCTGCTGGCCCTACAGCACATGACCACCAACCAGTAGGAACGGTTTGGATTGGCATTG
CTATTGGGGATGAAGAGCCGATAACATATTTACTTCATTTATCGGGTATGCGCAACACGAATCGTTTGCGTGCTGTAAAG
TTTACATGTCATTACTTAATGCAACAATTGGAAGAACGAGGCTTTATGAAACGTTATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.913

98.329

0.52
  cinA Streptococcus mitis SK321

46.475

91.408

0.425
  cinA Streptococcus pneumoniae Rx1

45.953

91.408

0.42
  cinA Streptococcus pneumoniae TIGR4

45.953

91.408

0.42
  cinA Streptococcus pneumoniae R6

45.953

91.408

0.42
  cinA Streptococcus mitis NCTC 12261

45.953

91.408

0.42
  cinA Streptococcus pneumoniae D39

45.692

91.408

0.418
  cinA Streptococcus mutans UA159

44.974

90.215

0.406
  cinA Streptococcus suis isolate S10

39.947

90.215

0.36