Detailed information NTG0560092

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: LT41_RS06375
• Genome accession: NZ_CP073712
• Coordinates: 1192908..1193867 (+)
• Length: 319 a.a.
• NCBI ID: WP_032583782.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain G1
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1187908..1198867

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LT41_RS06350 (LT41_006350)	neuC	1188476..1189591 (+)	1116	WP_002858400.1	UDP-N-acetylglucosamine 2-epimerase	-
LT41_RS09705 (LT41_006355)	-	1189588..1190502 (+)	915	Protein_1247	beta-1,4-N-acetylgalactosaminyltransferase	-
LT41_RS09710 (LT41_006360)	-	1190536..1191198 (+)	663	WP_002881429.1	N-acylneuraminate cytidylyltransferase	-
LT41_RS06365 (LT41_006365)	-	1191193..1192041 (-)	849	WP_019108742.1	glycosyltransferase	-
LT41_RS06370 (LT41_006370)	waaV	1192025..1192849 (-)	825	WP_002858096.1	glycosyltransferase family 2 protein	-
LT41_RS06375 (LT41_006375)	waaF	1192908..1193867 (+)	960	WP_032583782.1	lipopolysaccharide heptosyltransferase II	Regulator
LT41_RS06380 (LT41_006380)	gmhA	1193848..1194408 (-)	561	WP_002858021.1	D-sedoheptulose 7-phosphate isomerase	-
LT41_RS06385 (LT41_006385)	rfaE1	1194405..1195790 (-)	1386	WP_002890180.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
LT41_RS06390 (LT41_006390)	rfaD	1195783..1196736 (-)	954	WP_002852832.1	ADP-glyceromanno-heptose 6-epimerase	-
LT41_RS06395 (LT41_006395)	gmhB	1196737..1197297 (-)	561	WP_002878815.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
LT41_RS06400 (LT41_006400)	-	1197379..1197681 (+)	303	WP_002852762.1	cytochrome c	-
LT41_RS06405 (LT41_006405)	ccoS	1197704..1197910 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36750.35 Da
• Isoelectric Point: 10.2412

>NTDB_id=560092 LT41_RS06375 WP_032583782.1 1192908..1193867(+) (waaF) [Campylobacter jejuni strain G1]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLLFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide

• Length: 960 bp

>NTDB_id=560092 LT41_RS06375 WP_032583782.1 1192908..1193867(+) (waaF) [Campylobacter jejuni strain G1]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCTCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	99.687	100	0.997