Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   LT41_RS03590 Genome accession   NZ_CP073712
Coordinates   670574..671011 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain G1     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 665574..676011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT41_RS09525 - 666193..666700 (+) 508 Protein_691 sensor histidine kinase KdpD -
  LT41_RS09530 - 666758..667993 (+) 1236 WP_250533271.1 DUF4118 domain-containing protein -
  LT41_RS03575 (LT41_003575) uvrB 667988..669961 (-) 1974 WP_032584138.1 excinuclease ABC subunit UvrB -
  LT41_RS03580 (LT41_003580) - 670115..670345 (+) 231 WP_002852327.1 hypothetical protein -
  LT41_RS03585 (LT41_003585) - 670335..670577 (+) 243 WP_002854947.1 hypothetical protein -
  LT41_RS03590 (LT41_003590) Cj0683 670574..671011 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LT41_RS03595 (LT41_003595) priA 670993..672846 (+) 1854 WP_002860009.1 primosomal protein N' -
  LT41_RS03600 (LT41_003600) cipA 672856..674250 (-) 1395 WP_032584135.1 DUF2972 domain-containing protein -
  LT41_RS03605 (LT41_003605) ispG 674396..675469 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=560086 LT41_RS03590 WP_002852324.1 670574..671011(+) (Cj0683) [Campylobacter jejuni strain G1]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=560086 LT41_RS03590 WP_002852324.1 670574..671011(+) (Cj0683) [Campylobacter jejuni strain G1]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1