Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   L2Z16_RS08355 Genome accession   NZ_CP091359
Coordinates   1719662..1721650 (+) Length   662 a.a.
NCBI ID   WP_000211075.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB180-VUB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1714662..1726650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z16_RS08325 (L2Z16_08325) - 1714695..1715240 (+) 546 WP_001109743.1 GNAT family N-acetyltransferase -
  L2Z16_RS08330 (L2Z16_08330) - 1715309..1716133 (-) 825 WP_001021792.1 OXA-51 family carbapenem-hydrolyzing class D beta-lactamase OXA-66 -
  L2Z16_RS08335 (L2Z16_08335) - 1716532..1717092 (+) 561 WP_001050729.1 FxsA family protein -
  L2Z16_RS08340 (L2Z16_08340) - 1717156..1717341 (-) 186 WP_000192616.1 hypothetical protein -
  L2Z16_RS08345 (L2Z16_08345) - 1717600..1717848 (+) 249 WP_000966850.1 hypothetical protein -
  L2Z16_RS08350 (L2Z16_08350) metK 1717972..1719138 (-) 1167 WP_001209544.1 methionine adenosyltransferase -
  L2Z16_RS08355 (L2Z16_08355) recP/tkt 1719662..1721650 (+) 1989 WP_000211075.1 transketolase Machinery gene
  L2Z16_RS08360 (L2Z16_08360) - 1721705..1722112 (-) 408 WP_000248284.1 OsmC family protein -
  L2Z16_RS08365 (L2Z16_08365) - 1722327..1722917 (+) 591 WP_000550331.1 YceI family protein -
  L2Z16_RS08370 (L2Z16_08370) - 1722963..1723553 (-) 591 WP_001187976.1 lecithin retinol acyltransferase family protein -
  L2Z16_RS08375 (L2Z16_08375) - 1723739..1724485 (+) 747 WP_000699311.1 phosphodiester glycosidase family protein -
  L2Z16_RS08380 (L2Z16_08380) - 1724521..1724751 (-) 231 WP_000011679.1 hypothetical protein -
  L2Z16_RS08385 (L2Z16_08385) trmA 1725000..1726085 (-) 1086 WP_000204640.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72288.70 Da        Isoelectric Point: 4.9694

>NTDB_id=560057 L2Z16_RS08355 WP_000211075.1 1719662..1721650(+) (recP/tkt) [Acinetobacter baumannii strain AB180-VUB]
MTTPLNERRIANAIRVLAMDAVQQANSGHPGAPMGMADIADVVWREFLNHNPNNPQWANRDRFVLSNGHGSMLQYALLHL
TGYDLSIEDLKQFRQLHSKTPGHPEYGYAPGIETTTGPLGQGIANAVGFALAEKTLAAQFNKDDLKVVDHFTYCFLGDGC
LMEGISHEVCSLAGTLQLGKLIAYYDDNGISIDGEVEGWFSDDTEERFKSYGWQVLRVDGHDADAIRQATVEAKAETQKP
TIIICKTIIGLGSPNKQGKEDCHGAPLGKDEITLTREALGWTEEAFVIPADVYAAWDAKAKGNEAEAAWNEVFAQYQAKY
PTEAAELLRRISGDLPTEFSAQADAFIRETNAKAETVATRKASQNTLQAFGPLLPELLGGSADLAGSNLTLWKGCQGVQE
NPAGNYVYYGVREFGMTAIANGVALHGGFIPYVATFLMFMEYARNAVRMSALMKQRVIHVYTHDSIGLGEDGPTHQPIEQ
IASLRGTPNLNTWRPADTVETAIAWKSALERKDGPTALIFSRQNLPFQTRTEEQIQNAAKGGYVLAQEKGELKAIIIATG
SEVSLAMEAYAQLEGVRVVSMPCAEEFMKQDAAYREAVLPAHIRARVAVEAAHVDYWWKFVGLDGKVIGMTTYGESAPAK
DLFQFFGITTEAVVAAVKELTA

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=560057 L2Z16_RS08355 WP_000211075.1 1719662..1721650(+) (recP/tkt) [Acinetobacter baumannii strain AB180-VUB]
ATGACGACCCCTTTAAACGAACGTCGTATTGCAAACGCAATTCGTGTATTGGCAATGGATGCTGTGCAACAGGCAAACTC
AGGGCATCCAGGTGCTCCAATGGGGATGGCAGATATTGCTGATGTCGTCTGGCGCGAGTTTTTAAATCACAACCCAAATA
ATCCACAATGGGCAAACCGTGACCGTTTTGTTTTATCAAATGGCCATGGTTCAATGTTGCAATATGCTTTGCTTCATTTA
ACAGGTTATGATCTTTCAATTGAAGATTTAAAACAATTCCGTCAATTGCACTCAAAAACTCCTGGTCACCCTGAATATGG
TTATGCTCCAGGAATTGAAACAACGACAGGTCCTTTGGGTCAAGGTATTGCGAACGCTGTTGGTTTTGCATTAGCAGAAA
AAACTTTAGCTGCTCAGTTCAATAAAGATGACTTAAAAGTAGTTGATCACTTTACCTATTGTTTCTTAGGTGATGGCTGT
TTAATGGAAGGTATTTCTCATGAAGTATGTTCTTTAGCAGGTACTTTACAGCTTGGTAAATTGATTGCTTATTATGATGA
CAACGGCATTTCGATTGATGGTGAAGTAGAAGGCTGGTTTAGTGATGACACTGAAGAGCGTTTCAAGTCTTATGGTTGGC
AAGTTCTTCGTGTAGATGGGCATGATGCTGATGCGATTCGTCAAGCAACAGTTGAAGCTAAAGCAGAAACTCAAAAACCA
ACGATTATTATTTGTAAAACAATTATTGGCTTAGGTTCTCCAAACAAGCAAGGTAAAGAAGACTGTCACGGTGCACCACT
GGGTAAAGATGAAATTACCTTAACTCGTGAAGCTTTAGGTTGGACTGAAGAAGCATTTGTTATTCCTGCTGATGTATATG
CTGCATGGGATGCTAAAGCAAAAGGTAATGAAGCTGAAGCAGCTTGGAATGAAGTGTTTGCTCAATATCAAGCAAAATAT
CCAACGGAAGCAGCTGAGTTACTTCGTCGTATTAGCGGTGACTTACCAACAGAATTTTCAGCTCAAGCAGATGCATTTAT
TCGTGAAACAAATGCTAAAGCTGAAACTGTAGCAACTCGTAAAGCGAGCCAAAACACATTACAAGCATTTGGTCCTTTAT
TACCTGAATTATTAGGTGGTTCTGCGGACTTGGCAGGTTCTAACTTAACACTTTGGAAAGGTTGCCAAGGCGTTCAAGAA
AACCCGGCTGGTAACTACGTGTATTATGGTGTACGTGAGTTCGGTATGACTGCAATCGCTAACGGTGTTGCATTGCATGG
CGGCTTCATTCCTTACGTTGCAACGTTCTTAATGTTTATGGAATATGCACGTAATGCGGTACGTATGTCTGCATTAATGA
AGCAACGCGTGATTCATGTTTATACACATGACTCAATCGGTTTAGGTGAAGATGGTCCAACACACCAACCAATTGAACAA
ATTGCTTCTTTACGTGGCACACCAAACTTAAATACTTGGCGTCCTGCTGATACTGTAGAAACAGCAATTGCGTGGAAATC
TGCTTTAGAGCGTAAAGATGGCCCTACAGCACTTATTTTCTCTCGTCAAAACTTACCATTCCAAACGCGTACTGAAGAGC
AAATCCAAAATGCGGCAAAAGGTGGTTATGTTCTTGCTCAAGAGAAAGGTGAGTTGAAAGCAATTATTATTGCTACTGGT
TCAGAAGTTTCTTTAGCAATGGAAGCTTATGCTCAACTTGAAGGTGTTCGTGTTGTTTCTATGCCATGTGCAGAAGAGTT
CATGAAACAAGATGCTGCATATCGTGAAGCAGTATTACCAGCTCATATTCGTGCACGTGTTGCTGTAGAAGCTGCTCATG
TTGACTACTGGTGGAAGTTTGTTGGTCTTGATGGCAAAGTAATTGGTATGACAACTTATGGTGAGTCAGCACCAGCAAAA
GACTTGTTCCAATTCTTCGGTATTACAACTGAGGCTGTAGTTGCTGCGGTAAAAGAGTTAACTGCTTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(551-653)

Transketolase, pyrimidine binding domain (Transket_pyr)

(356-526)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.496

99.547

0.473