Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KDJ56_RS01795 Genome accession   NZ_CP073708
Coordinates   315657..316565 (+) Length   302 a.a.
NCBI ID   WP_323958396.1    Uniprot ID   -
Organism   Brevibacillus composti strain FJAT-54424     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 310657..321565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ56_RS01760 (KDJ56_01760) - 310675..310935 (+) 261 WP_198828309.1 DUF2573 family protein -
  KDJ56_RS01765 (KDJ56_01765) - 310979..311122 (-) 144 WP_198828310.1 hypothetical protein -
  KDJ56_RS01770 (KDJ56_01770) - 311299..312282 (+) 984 WP_198828311.1 zinc-binding alcohol dehydrogenase family protein -
  KDJ56_RS01775 (KDJ56_01775) - 312322..312624 (+) 303 WP_198828312.1 ArsR/SmtB family transcription factor -
  KDJ56_RS01780 (KDJ56_01780) - 312921..313922 (+) 1002 WP_228728391.1 LLM class flavin-dependent oxidoreductase -
  KDJ56_RS01785 (KDJ56_01785) - 313974..315125 (+) 1152 WP_198828314.1 NADH-dependent flavin oxidoreductase -
  KDJ56_RS01790 (KDJ56_01790) - 315317..315604 (+) 288 WP_198828315.1 HesB/YadR/YfhF family protein -
  KDJ56_RS01795 (KDJ56_01795) ceuB 315657..316565 (+) 909 WP_323958396.1 ABC transporter permease Machinery gene
  KDJ56_RS01800 (KDJ56_01800) - 316555..317505 (+) 951 WP_198828316.1 iron chelate uptake ABC transporter family permease subunit -
  KDJ56_RS01805 (KDJ56_01805) - 317499..318257 (+) 759 WP_198828317.1 ABC transporter ATP-binding protein -
  KDJ56_RS01810 (KDJ56_01810) - 318364..319356 (+) 993 WP_198828318.1 siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 302 a.a.        Molecular weight: 33117.02 Da        Isoelectric Point: 9.3455

>NTDB_id=560016 KDJ56_RS01795 WP_323958396.1 315657..316565(+) (ceuB) [Brevibacillus composti strain FJAT-54424]
MIEPAAFACGLSLDLLSLTDDQVEILLVSRLPRLISIIIAGVSMSICGLIMQQLSRNKFVSPTTAGTLDSARLGILVTLM
LYTTASPLVKMLVSFAFALLGTFAFMKILDKIKFKDTIFIPLVGLMFGNIISSLATFIAYKYDLIQNMSAWLQGDFSMIM
KGRYELLYISIPLLIIAYLYANKFTIAGMGEDFSKNLGLPYKQVLHIGLILVALMTSSVVLTVGMIPFLGLIIPNIVSIY
RGDHLKSSLPHTALLGAVFVLFCDILGRIVIYPYEISISLTVGVLGSGIFAYLLMRRKAYGI

Nucleotide


Download         Length: 909 bp        

>NTDB_id=560016 KDJ56_RS01795 WP_323958396.1 315657..316565(+) (ceuB) [Brevibacillus composti strain FJAT-54424]
TTGATCGAGCCCGCAGCCTTTGCCTGCGGGCTTTCGCTGGATCTGCTGAGTCTGACGGACGATCAGGTGGAGATTTTGCT
GGTGAGCAGGCTGCCGCGCTTGATCAGCATCATCATCGCGGGGGTCAGCATGAGCATCTGCGGTCTGATCATGCAGCAGC
TGAGCCGCAACAAATTCGTCTCGCCCACCACGGCAGGGACGCTGGATTCTGCCCGGCTGGGCATACTGGTAACGCTGATG
CTGTACACCACTGCCAGTCCCTTGGTCAAAATGCTGGTCTCCTTCGCGTTTGCCCTTTTGGGGACGTTTGCGTTCATGAA
GATTCTCGACAAAATCAAGTTCAAGGATACGATTTTCATTCCGCTGGTGGGCTTGATGTTTGGCAATATCATCAGCTCGC
TGGCTACCTTTATCGCGTACAAATACGATCTCATCCAAAATATGTCGGCCTGGCTCCAGGGCGATTTCTCCATGATCATG
AAAGGCCGCTACGAGCTTCTGTACATCAGCATCCCGCTCTTGATCATCGCGTACCTGTACGCCAACAAGTTTACGATCGC
CGGCATGGGCGAGGATTTTTCCAAAAACCTCGGCCTCCCGTACAAACAGGTGCTGCATATCGGTCTGATTCTCGTGGCGC
TGATGACTTCTTCCGTGGTGCTGACCGTCGGGATGATTCCTTTTCTCGGTCTGATTATCCCGAACATTGTGAGCATCTAC
CGGGGCGACCACCTGAAAAGCAGCCTGCCGCATACAGCCCTACTCGGAGCTGTCTTCGTCCTGTTCTGCGATATATTGGG
GCGGATCGTCATCTACCCGTACGAAATCTCCATTAGTTTGACCGTTGGAGTGCTCGGCAGCGGCATCTTTGCTTACTTGC
TGATGAGGAGAAAGGCATATGGCATATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(19-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.903

95.364

0.533