Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   C663_RS07540 Genome accession   NC_020244
Coordinates   1476465..1476929 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis XF-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1471465..1481929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS07525 (C663_1442) kinA 1471932..1473752 (+) 1821 WP_015483173.1 sporulation histidine kinase KinA -
  C663_RS07530 (C663_1443) dapX 1473762..1474943 (-) 1182 WP_015252196.1 aminotransferase A -
  C663_RS20600 (C663_1444) - 1475145..1475306 (-) 162 WP_003245246.1 hypothetical protein -
  C663_RS07535 (C663_1445) cheV 1475510..1476421 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  C663_RS07540 (C663_1446) kre 1476465..1476929 (-) 465 WP_003232406.1 YkyB family protein Regulator
  C663_RS07545 (C663_1447) ykuC 1477055..1478347 (-) 1293 WP_014479656.1 MFS transporter -
  C663_RS07550 (C663_1448) ltdD 1478423..1478917 (-) 495 WP_080030726.1 L,D-transpeptidase family protein -
  C663_RS07555 (C663_1449) ppeE 1478974..1479834 (-) 861 WP_015383533.1 metallophosphoesterase -
  C663_RS07560 (C663_1450) fadH 1479977..1480741 (+) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=55996 C663_RS07540 WP_003232406.1 1476465..1476929(-) (kre) [Bacillus subtilis XF-1]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=55996 C663_RS07540 WP_003232406.1 1476465..1476929(-) (kre) [Bacillus subtilis XF-1]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment