Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KAI36_RS23805 Genome accession   NZ_CP073682
Coordinates   5325172..5326545 (-) Length   457 a.a.
NCBI ID   WP_013312184.1    Uniprot ID   A0A0M1Q9A3
Organism   Paenibacillus sp. S02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5320172..5331545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAI36_RS23780 (KAI36_04776) ispF 5320761..5321237 (-) 477 WP_025723806.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  KAI36_RS23785 (KAI36_04777) ispD 5321234..5321932 (-) 699 WP_220026169.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  KAI36_RS23790 (KAI36_04778) - 5322003..5323088 (-) 1086 WP_013312181.1 PIN/TRAM domain-containing protein -
  KAI36_RS23795 (KAI36_04779) pssA 5323282..5324028 (-) 747 WP_025723803.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  KAI36_RS23800 (KAI36_04780) disA 5324083..5325159 (-) 1077 WP_013312183.1 DNA integrity scanning diadenylate cyclase DisA -
  KAI36_RS23805 (KAI36_04781) radA 5325172..5326545 (-) 1374 WP_013312184.1 DNA repair protein RadA Machinery gene
  KAI36_RS23810 (KAI36_04782) clpC 5326786..5329230 (-) 2445 WP_023990572.1 ATP-dependent protease ATP-binding subunit ClpC -
  KAI36_RS23815 (KAI36_04783) - 5329275..5330339 (-) 1065 WP_039274956.1 protein arginine kinase -
  KAI36_RS23820 (KAI36_04784) - 5330368..5330892 (-) 525 WP_220026170.1 UvrB/UvrC motif-containing protein -
  KAI36_RS23825 (KAI36_04785) - 5330962..5331426 (-) 465 WP_013312188.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49244.92 Da        Isoelectric Point: 6.7620

>NTDB_id=559906 KAI36_RS23805 WP_013312184.1 5325172..5326545(-) (radA) [Paenibacillus sp. S02]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKETRILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVSNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHF
PSPRRMGTGVDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVGTVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=559906 KAI36_RS23805 WP_013312184.1 5325172..5326545(-) (radA) [Paenibacillus sp. S02]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACGGAATGTGGTTATGAATCGCCCAAATGGTACGGAAAATGTCCTGGATG
CCAGGCGTGGAATTCCATGGTCGAAGAAACGGAAAGCGTTGTAAAAACTCAAGGAATGGGGTCTTCCCTTCTTACTCATA
GCACAAAAGACAAGCCACTCCCTATTATAGAGGTGGAGAGTGGCAAAGAAACACGAATTTTGACGGGAATTGGCGAATTG
AATCGAGTACTCGGTGGAGGTGTGGTACCGGGTTCACTCGTTTTGGTGGGCGGTGATCCGGGAATCGGTAAATCTACGCT
TATGCTGCAAACATCTAATGAGCTGGCTTTAACTGGTTTAAAGGTGCTGTACGTGTCTGGTGAGGAATCTGTCCGTCAAA
CGAAACTACGTGCAGATCGGCTCGGTGCCTTGTCCCCCAGCCTATACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCGGTGGACAGCTTGAAGCCGGAGTTTTTGGTCATCGACTCGATACAGACCGTATATTTGCCTGAGGTGACGAGTGC
ACCAGGTAGTGTGGCTCAGGTGCGGGAGTGTACTTCACGCTTTATGCGAATTGCCAAGGGGCTAGGTATTGCTACGGTAT
TGGTAGGACATGTGACCAAGGAAGGGGCCATTGCAGGTCCACGTTTGTTGGAACATATGGTTGATTGTGTGCTTTATTTT
GAAGGAGAGCGTCATCATACGTATCGGCTTTTGCGTGCAGTTAAAAACCGTTTCGGTTCTACAAATGAAATTGGTATTTT
TGAAATGGCTGAAAGCGGTTTGCGTGAGGTGTCAAATCCTTCTGAACTATTCCTGTCTGAACGACCACTGGGGGTGGCGG
GTTCTACTGTTGTAGCCAGTATGGAAGGAACCCGACCTGTATTGGTTGAACTGCAAGCATTGATTGCAGCTACGCATTTC
CCATCTCCGCGCCGAATGGGCACAGGAGTCGACCATCATCGAATGGGATTAATCATAGCCGTGCTAGAAAAGCGGATGGG
CATGTTTTTGCAAAACCAGGATGCTTATCTCAACGTAGCCGGAGGCGTGAAGTTGGATGAACCGGCGGTGGATTTGGCTA
TAGCTGTGAGCATTGCTTCCAGCTTTAGGGATGCTCCTACTAAGCCGTATGATGTGATTTTTGGCGAGGTGGGACTGACA
GGTGAGGTACGTGCGGTATCCCGAGCAGAACAGCGAGTACGGGAAGCGGAGAAACTAGGTTTCAAACGGGTGATCATGCC
GGAGAAAAGCTTGAAGGGCTGGACACATCCGAAAGGGATTCAAATTATAGGAGTAGGAACGGTGGCAGATGCACTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-429)

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q9A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.031

100

0.672
  radA Streptococcus pneumoniae Rx1

58.85

98.906

0.582
  radA Streptococcus pneumoniae D39

58.85

98.906

0.582
  radA Streptococcus pneumoniae R6

58.85

98.906

0.582
  radA Streptococcus pneumoniae TIGR4

58.85

98.906

0.582
  radA Streptococcus mitis NCTC 12261

58.85

98.906

0.582
  radA Streptococcus mitis SK321

58.628

98.906

0.58