Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KAI36_RS22825 Genome accession   NZ_CP073682
Coordinates   5106634..5107587 (-) Length   317 a.a.
NCBI ID   WP_220026094.1    Uniprot ID   -
Organism   Paenibacillus sp. S02     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5101634..5112587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAI36_RS22800 - 5101982..5102891 (-) 910 Protein_4482 aldo/keto reductase -
  KAI36_RS22805 (KAI36_04585) - 5103172..5103915 (-) 744 WP_220026091.1 alpha/beta hydrolase-fold protein -
  KAI36_RS22810 (KAI36_04586) - 5103949..5104929 (-) 981 WP_220026092.1 siderophore ABC transporter substrate-binding protein -
  KAI36_RS22815 (KAI36_04587) - 5104942..5105700 (-) 759 WP_039273792.1 ABC transporter ATP-binding protein -
  KAI36_RS22820 (KAI36_04588) - 5105694..5106644 (-) 951 WP_220026093.1 iron chelate uptake ABC transporter family permease subunit -
  KAI36_RS22825 (KAI36_04589) ceuB 5106634..5107587 (-) 954 WP_220026094.1 ABC transporter permease Machinery gene
  KAI36_RS22830 (KAI36_04590) - 5107917..5108594 (+) 678 WP_220026095.1 response regulator transcription factor -
  KAI36_RS22835 (KAI36_04591) - 5108591..5109508 (+) 918 WP_220028192.1 HAMP domain-containing sensor histidine kinase -
  KAI36_RS22840 (KAI36_04592) - 5109617..5110294 (+) 678 WP_220026096.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34760.74 Da        Isoelectric Point: 9.9130

>NTDB_id=559904 KAI36_RS22825 WP_220026094.1 5106634..5107587(-) (ceuB) [Paenibacillus sp. S02]
MKLRYLILAFLVLAFASVFIGVHDVTPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDRIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=559904 KAI36_RS22825 WP_220026094.1 5106634..5107587(-) (ceuB) [Paenibacillus sp. S02]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGGCTCATTATGCAGCAGCTTACCCGGAACCGATTTGTATCTCCCACCACTGCA
GGGACGATGGATGCGGCACGATTGGGTGTACTGATGGCTATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATACTGGATAGAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTTGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAAGGGGATTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTAGTCAGCATGTATATGGGGGATAATCTAAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTTTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.794

99.369

0.505