Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KAI36_RS12575 Genome accession   NZ_CP073682
Coordinates   2892189..2894039 (+) Length   616 a.a.
NCBI ID   WP_220027916.1    Uniprot ID   -
Organism   Paenibacillus sp. S02     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2887189..2899039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAI36_RS12555 (KAI36_02532) - 2887935..2889158 (+) 1224 WP_220027914.1 Ger(x)C family spore germination protein -
  KAI36_RS12560 (KAI36_02533) - 2889164..2889394 (+) 231 WP_104496413.1 hypothetical protein -
  KAI36_RS12565 (KAI36_02534) - 2889949..2890359 (+) 411 WP_160790024.1 MarR family transcriptional regulator -
  KAI36_RS12570 (KAI36_02535) rcrP 2890433..2892196 (+) 1764 WP_220027915.1 ABC transporter ATP-binding protein Regulator
  KAI36_RS12575 (KAI36_02536) rcrQ 2892189..2894039 (+) 1851 WP_220027916.1 ABC transporter ATP-binding protein Regulator
  KAI36_RS12580 (KAI36_02537) - 2894160..2894468 (+) 309 WP_025723019.1 hypothetical protein -
  KAI36_RS12585 - 2894931..2895050 (+) 120 WP_258382322.1 hypothetical protein -
  KAI36_RS12590 (KAI36_02538) - 2895339..2895758 (+) 420 WP_220028114.1 ester cyclase -
  KAI36_RS12595 (KAI36_02539) - 2895981..2896910 (-) 930 Protein_2461 PLP-dependent aminotransferase family protein -
  KAI36_RS12600 (KAI36_02540) - 2896885..2897376 (+) 492 WP_220027917.1 glycine betaine ABC transporter substrate-binding protein -
  KAI36_RS12605 (KAI36_02541) - 2897373..2898161 (+) 789 WP_258382292.1 ABC transporter ATP-binding protein -
  KAI36_RS12610 (KAI36_02542) - 2898158..2898793 (+) 636 WP_220027918.1 ABC transporter permease -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67861.40 Da        Isoelectric Point: 6.1590

>NTDB_id=559892 KAI36_RS12575 WP_220027916.1 2892189..2894039(+) (rcrQ) [Paenibacillus sp. S02]
MDKNEHTVDSQQMKMNQGGPMGKGPAGGKGAGEKANNFKKTIRQLVSYSKDYVPMIVLAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIVATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTISIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTTKLDTAKGEVEFKHVRFGYNADRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAACKAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=559892 KAI36_RS12575 WP_220027916.1 2892189..2894039(+) (rcrQ) [Paenibacillus sp. S02]
ATGGATAAGAATGAACACACCGTCGATAGCCAGCAAATGAAAATGAATCAGGGAGGTCCCATGGGTAAAGGCCCTGCGGG
GGGCAAGGGTGCTGGTGAAAAAGCAAATAATTTTAAAAAGACCATCAGACAGCTTGTATCCTACAGCAAGGACTATGTGC
CTATGATTGTACTAGCTATGGTACTGGCCCTGGTCGGCTCCACCCTCAACGTGATTGGTCCGGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCGTAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTATTGGCGCTTTT
ATATGGATTTGGTCTTATCTTTAACTATTTCCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGCAATGTGCTTAGCCGC
GTAACCAACGATGTCGATACCATCGGACAAACGTTAAACAACAGTCTCGGCACACTTGTCAGTGCGCTGGCTACCTTCGT
GGGCGCCTTGATTATGATGCTTTATACGAACTGGATCATGACCGTTACCGGAATTGTAGCTACGCTGATCGGCTTTTGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATT
GAAGAAACCTATGCTGGTCATAACGTGGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCCTATATACAAATGCATGGAAGTCCCAGTTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGGAATT
TTGGTTATGTCGCGGTCTGTGTTGTGGGAGCTTTGCTGGTCAACCAACAGACTATAAGCATTGGAACTATTGTCGCCTTC
ATGGTGTATATTCGACTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCCGCAACCAATCTGCAATCGGCCGCCGCCGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCACAAAGCTGGACACCGCCA
AAGGGGAAGTCGAATTCAAACATGTCCGTTTCGGCTATAATGCAGACCGTATGATTATCAAGGACTTCTCCATGAAAGCT
GAAGCTGGCCAGAAAATTGCCATTGTCGGTCCGACAGGCGCCGGTAAGACCACGCTCGTGAATTTACTCATGAGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACGCCGATTAGCCAATTAACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACCGAT
GAGCAGGTGGAAGCTGCATGTAAAGCGGTGGGGCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGTGCT
GGACGACAAAGCTAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCGATGATTGAAGATTCACCCATGC
TCATTCTGGATGAGGCTACAAGCTCGGTTGATACGCGTACAGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGATGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGCTGGCTAAAGGCGGCTTCTATGCCGATCTATACAACAGTCAGTTTGAAC
ATGCATCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(58-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.326

93.669

0.528