Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   KAI36_RS12570 Genome accession   NZ_CP073682
Coordinates   2890433..2892196 (+) Length   587 a.a.
NCBI ID   WP_220027915.1    Uniprot ID   -
Organism   Paenibacillus sp. S02     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2885433..2897196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAI36_RS12550 (KAI36_02531) - 2886425..2887954 (+) 1530 WP_220027913.1 spore germination protein -
  KAI36_RS12555 (KAI36_02532) - 2887935..2889158 (+) 1224 WP_220027914.1 Ger(x)C family spore germination protein -
  KAI36_RS12560 (KAI36_02533) - 2889164..2889394 (+) 231 WP_104496413.1 hypothetical protein -
  KAI36_RS12565 (KAI36_02534) - 2889949..2890359 (+) 411 WP_160790024.1 MarR family transcriptional regulator -
  KAI36_RS12570 (KAI36_02535) rcrP 2890433..2892196 (+) 1764 WP_220027915.1 ABC transporter ATP-binding protein Regulator
  KAI36_RS12575 (KAI36_02536) rcrQ 2892189..2894039 (+) 1851 WP_220027916.1 ABC transporter ATP-binding protein Regulator
  KAI36_RS12580 (KAI36_02537) - 2894160..2894468 (+) 309 WP_025723019.1 hypothetical protein -
  KAI36_RS12585 - 2894931..2895050 (+) 120 WP_258382322.1 hypothetical protein -
  KAI36_RS12590 (KAI36_02538) - 2895339..2895758 (+) 420 WP_220028114.1 ester cyclase -
  KAI36_RS12595 (KAI36_02539) - 2895981..2896910 (-) 930 Protein_2461 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64866.18 Da        Isoelectric Point: 7.8016

>NTDB_id=559891 KAI36_RS12570 WP_220027915.1 2890433..2892196(+) (rcrP) [Paenibacillus sp. S02]
MLKIFKYLKKNEWMLVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPVSELLIPGSYMLFCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNNFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGAAVAALILMLSVIVVFALPSFQKIQRLTDNLNRVTREHLIGLRVVRAYNADQYQQEKFEQANVELTNTNLFANRLMTM
IGPGMTFIMSGLSVSIYWIGAYLINGAAVPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFILMPRASISAKRIMEVLNTE
SSIINGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKRGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRNYNQQALHNKIGYVPQRAVLFNGTVVSNVSYGDNGRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=559891 KAI36_RS12570 WP_220027915.1 2890433..2892196(+) (rcrP) [Paenibacillus sp. S02]
ATGCTAAAGATATTCAAATATCTCAAGAAAAATGAATGGATGCTTGTGCTTTGCAGCCTAGCCTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTACCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACGGAAGGAACGCCTGTGTCAGAAC
TGCTGATTCCCGGCAGTTACATGTTGTTTTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTGGGATATTTCGCGGCA
AAGGTGGCTGCAGGGCTGGCTATGCGTCTGCGTGCGATGGTCTTTGACAAGACCTTATCCTTTTCAATGGAAGAGATGAA
CAACTTTTCGACGGCAAGCCTCATTACCCGCTCCACGAACGATGTTACGCAGATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCACCGATTCTGGCCGTGTGGGCCATTGTGAAGATTGCGGATAAAAACTGGCAGTGGACCGCCTCC
ACAGGAGCGGCCGTGGCTGCTCTGATCCTGATGCTAAGTGTCATTGTTGTTTTCGCTCTTCCAAGTTTCCAGAAAATCCA
GCGTCTCACTGATAATCTGAACAGGGTAACACGTGAGCATCTGATCGGACTTCGGGTAGTACGCGCTTATAATGCAGATC
AGTATCAGCAGGAGAAGTTCGAGCAGGCTAACGTCGAGTTGACGAATACAAACCTGTTTGCGAACCGTTTAATGACGATG
ATTGGCCCAGGTATGACCTTTATTATGTCAGGTCTGAGTGTCTCTATCTATTGGATCGGCGCTTACCTGATTAACGGGGC
GGCCGTACCAGACCGCATCACGCTGTTCTCCAATATGGTCGTATTCTCCTCTTATGCAATGCAGGTGGTTATGGCCTTTA
TGATGGTAAGTATGATATTCATCCTGATGCCTCGCGCCTCGATCTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGCATCATTAACGGGCATGAGACGACTGGAGAAGAGAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGACGCGGAGGAGGCCGTGCTTCGCAACATCAGCTTCACGGCGAAACGAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGCGGCAAAACCAGCGTGATCAATCTGATTCCCCGTTTCTATGATGTGACCGAGGGAGAGGTGCTTGTGGAC
GGTGTGAATGTCAGGAACTATAATCAGCAGGCACTCCATAACAAAATCGGGTATGTTCCCCAGAGAGCTGTACTGTTCAA
CGGTACGGTGGTATCCAACGTTTCGTACGGTGATAACGGAAGAGCAGGAGCTTCGGAGAAACTTGTCAAAGAAGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTCGAAAAAATGGATGGTCAATATCAGGGTAGAATTTCGCAAGGTGGGGCGAACGTG
TCCGGTGGTCAAAAGCAGCGGCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAAATTTATATTTTCGATGATTCCTT
CTCGGCATTAGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGCCACGCTACGACACTTATCG
TTGGTCAGCGCATAGGTACGATCAAAGACGCTGATCGGATTATCGTGCTGGACCAGGGAGAGATTGTAGGGAGCGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAGATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.588

100

0.537