Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KB879_RS22585 Genome accession   NZ_CP073677
Coordinates   4851203..4852564 (-) Length   453 a.a.
NCBI ID   WP_010810633.1    Uniprot ID   A0A367PNZ5
Organism   Cupriavidus sp. KK10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4846203..4857564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB879_RS22565 (KB879_22565) - 4846738..4847700 (-) 963 WP_013957001.1 MurR/RpiR family transcriptional regulator -
  KB879_RS22570 (KB879_22570) - 4847985..4849919 (+) 1935 WP_013957002.1 ATP-binding cassette domain-containing protein -
  KB879_RS22575 (KB879_22575) - 4850007..4850492 (-) 486 WP_010810635.1 disulfide bond formation protein B -
  KB879_RS22580 (KB879_22580) - 4850637..4851200 (-) 564 WP_211979792.1 GNAT family N-acetyltransferase -
  KB879_RS22585 (KB879_22585) radA 4851203..4852564 (-) 1362 WP_010810633.1 DNA repair protein RadA Machinery gene
  KB879_RS22590 (KB879_22590) alr 4852660..4853781 (-) 1122 WP_114130991.1 alanine racemase -
  KB879_RS22595 (KB879_22595) lplT 4854352..4855671 (+) 1320 WP_041227955.1 lysophospholipid transporter LplT -
  KB879_RS22600 (KB879_22600) - 4855714..4856853 (-) 1140 WP_013957007.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48373.69 Da        Isoelectric Point: 7.2389

>NTDB_id=559872 KB879_RS22585 WP_010810633.1 4851203..4852564(-) (radA) [Cupriavidus sp. KK10]
MAKTKTVYTCTECGGTTPRWAGQCPHCQQWNTLVETVAESAANKRFQPLAASATVRKLSEIDAADVPRFSSGIDEFDRVL
GGGLVSGGVVLIGGDPGIGKSTLLLQALANLAGQRRVLYVSGEESGAQIALRAQRLGVESPSLGLLAEIQLEKIQATLEV
EKPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSSGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGDTH
SSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEETVPGSCVLVTQEGTRPLLVEIQALVDTAHVPNPRR
LAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEIRP
SPRGQERLKEAAKLGFTIAVIPKANAPKQKIDGLEVIAVERIEQAIDRVRHLD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=559872 KB879_RS22585 WP_010810633.1 4851203..4852564(-) (radA) [Cupriavidus sp. KK10]
TTGGCCAAGACCAAGACTGTCTATACGTGTACTGAATGCGGCGGCACCACGCCGCGCTGGGCCGGCCAGTGCCCGCATTG
CCAGCAGTGGAACACGCTGGTTGAGACGGTGGCCGAGTCCGCCGCGAACAAGCGCTTCCAGCCGCTGGCCGCCTCGGCCA
CGGTGCGCAAGCTGTCGGAGATCGATGCCGCTGACGTGCCGCGCTTCTCCAGCGGCATCGATGAATTCGACCGCGTGCTG
GGCGGCGGCCTGGTGTCGGGCGGGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCCACGCTGCTGCTGCAGGC
CCTGGCCAACCTTGCGGGCCAGCGCCGCGTGCTCTATGTCAGCGGCGAAGAATCCGGTGCGCAGATCGCGCTGCGCGCGC
AGCGGCTGGGCGTGGAAAGCCCGTCGCTGGGGTTGCTTGCCGAAATCCAGCTGGAGAAGATCCAGGCCACGCTGGAAGTG
GAAAAGCCCGAAGTCGCGGTAATCGACTCGATCCAGACGCTGTACTCCGAGGCGCTGACCTCCGCACCGGGCTCGGTCGC
GCAGGTACGCGAATGCGCGGCGCAGCTGACGCGCATTGCCAAGAGCAGCGGCATCACCATCATCCTGGTCGGCCATGTGA
CCAAGGAAGGCAGCCTGGCGGGTCCGCGCGTGCTGGAGCATATCGTCGATACGGTGCTGTATTTCGAGGGCGATACCCAC
TCGTCGCACCGGCTGATCCGCGCCTTCAAGAACCGCTTCGGCGCGGTCAATGAGCTGGGCGTGTTTGCCATGACCGAGCG
CGGCCTGCGCGGCATCAGCAATCCGTCGGCGCTGTTCCTGTCGCAGCACGAAGAGACCGTGCCGGGCTCGTGCGTGCTGG
TGACGCAGGAGGGCACGCGTCCGCTGCTGGTTGAGATCCAGGCGCTGGTCGATACCGCCCATGTACCCAACCCGCGCCGG
CTGGCGGTGGGCCTTGAGCAGAACCGGCTGGCGCTGCTGCTGGCGGTGCTGCACCGGCACGCGGGCATTGCCTGCTTTGA
CCAGGACGTGTTCCTGAACGCGGTGGGCGGGGTCAAGATCACCGAGCCCGCCGCCGACCTCGCGGTGCTGCTGTCGATCC
ATTCATCGATGCGCAACAAGCCGCTGCCGCGCGGCCTGGTGGTGTTCGGCGAAGTCGGCCTGGCCGGCGAGATCCGCCCC
AGCCCGCGCGGGCAGGAGCGCCTGAAGGAAGCCGCCAAGCTGGGCTTTACGATCGCCGTGATTCCCAAGGCGAACGCGCC
CAAACAGAAGATCGACGGGCTCGAAGTGATCGCGGTGGAACGCATCGAGCAGGCCATCGACCGCGTGCGCCATCTGGACT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A367PNZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.327

99.779

0.512
  radA Streptococcus pneumoniae Rx1

46.813

100

0.47
  radA Streptococcus pneumoniae D39

46.813

100

0.47
  radA Streptococcus pneumoniae R6

46.813

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.813

100

0.47
  radA Streptococcus mitis SK321

46.916

100

0.47
  radA Streptococcus mitis NCTC 12261

46.593

100

0.468